Locus 2932

Sequence ID 2L_DroMel_CAF1
Location 8,423,482 – 8,423,578
Length 96
Max. P 0.534220
window4652

overview

Window 2

Location 8,423,482 – 8,423,578
Length 96
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 87.04
Mean single sequence MFE -25.57
Consensus MFE -20.00
Energy contribution -19.84
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.78
SVM decision value 0.00
SVM RNA-class probability 0.534220
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8423482 96 - 22407834
CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUC-CCAUUCCC-------------------AUUAUCCGUUUCUCCAUUCCAAUAAAACCAUUUG
.(..((((((..(((((((((((((....)))).)))))...)))).....)))-)))..)..-------------------.................................. ( -23.80)
>DroSec_CAF1 21683 96 - 1
CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUCCCCAUUCCC-------------------AUUAUCCG-UUCUCCAUUCCAAUAAAACCAUUUG
.(..((((..(((.((((.((((((((......)))))).))..)))).)))..))))..)..-------------------........-......................... ( -23.70)
>DroSim_CAF1 21498 115 - 1
CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUUCCCAUUCCCAUUCCCAUUCCCAUUAUCCAUUAUCCG-UUCUCCAUUCCAAUAAAACCAUUUG
.(..(((((((((.((((.((((((((......)))))).))..)))).)))))))))..).............................-......................... ( -27.00)
>DroEre_CAF1 21916 95 - 1
CGUUUGGGAGAUGCCGGGCUGGCUUGUUAAAGCGCAGGCGCGGAGCCACCAUUC-CCAUUCCC-------------------AUUCUCCG-UUCUCCAUUCCAAUAAACCCAUUUG
......(((((.(((..((..((((....)))))).)))((((((.........-........-------------------...)))))-))))))................... ( -24.25)
>DroYak_CAF1 21956 99 - 1
CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAGAGCCACCAUUU-CCAUUCCC---------------AUCCAUUCUCCG-UUCUCCAUUCCAAUAAACCCAUUUG
.(..(((((((((.(((((((((((((......)))))).))).)))).)))).-....))))---------------)..)........-......................... ( -29.10)
>consensus
CGUUUGGGAGAUGCUGGCCUGGCUUGUUAAAGCGCAGGCGCAUAGCCACUAUUC_CCAUUCCC___________________AUUAUCCG_UUCUCCAUUCCAAUAAAACCAUUUG
......(((((...(((..((((((....)))).))(((.....)))........................................)))..)))))................... (-20.00 = -19.84 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:50 2006