Locus 2931

Sequence ID 2L_DroMel_CAF1
Location 8,423,345 – 8,423,436
Length 91
Max. P 0.543461
window4651

overview

Window 1

Location 8,423,345 – 8,423,436
Length 91
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.68
Mean single sequence MFE -21.47
Consensus MFE -15.45
Energy contribution -15.48
Covariance contribution 0.03
Combinations/Pair 1.24
Mean z-score -1.18
Structure conservation index 0.72
SVM decision value 0.02
SVM RNA-class probability 0.543461
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8423345 91 - 22407834
----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUGGUAGGGACAAUGCCUUAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA
----------------.((..(((((((...............(-----(..(((((....)))).)..))..(((......)))(.((((....))))).))))))))).. ( -23.70)
>DroSec_CAF1 21550 91 - 1
----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUUGUAGGGACAAUGCCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA
----------------.((..(((((((.....(((((....))-----))).....((((((.(.(((......))).).))))))((((....))))..))))))))).. ( -21.80)
>DroSim_CAF1 21365 91 - 1
----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUGGUAGGGACAAUGCCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA
----------------.((..(((((((...............(-----(..(((((....)))).)..))..(((......)))(.((((....))))).))))))))).. ( -23.70)
>DroEre_CAF1 21783 91 - 1
----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACUAUUUGUGGUAGGGACAAUGUCUGAGAGAAGAGUGCAUGCGCACCAGCGCAAUUGAA
----------------.((..(((((((...............(-----(..(((((....)))).)..))....(((......)))((((....))))..))))))))).. ( -20.30)
>DroWil_CAF1 42955 111 - 1
AAUUCUAUACAAAAACGCAUUGUUGUACAAUUAAAAUUGAAGUGAAGAAACGCACAAGGAAAAGUAA-UAUAAUAACGGAACCCUAAGUGCAUCAGCACCCGUACAAUUGAA
.....................(((((((.............(((........)))..((........-.........((...))...((((....))))))))))))).... ( -14.90)
>DroYak_CAF1 21823 91 - 1
----------------ACAUUGUUGUGCAAUUAAAAUUGAAAAG-----UUUCACCAUUUGUGGUAGGGACAAUGUCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA
----------------.((..(((((((...............(-----(..(((((....)))).)..))....((((....))))((((....))))..))))))))).. ( -24.40)
>consensus
________________ACAUUGUUGUGCAAUUAAAAUUGAAAAG_____UUUCACCAUUUGUGGUAGGGACAAUGCCUGAGAGCAGAGUGCAUGCGCACCAGCGCAAUUGAA
.................((..(((((((.............................(((((....(((......)))....)))))((((....))))..))))))))).. (-15.45 = -15.48 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:49 2006