| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,421,245 – 8,421,342 |
| Length | 97 |
| Max. P | 0.898485 |
| Location | 8,421,245 – 8,421,342 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.82 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -12.44 |
| Energy contribution | -11.67 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8421245 97 - 22407834 CA-------CUAUUUACAUAUAUGUAUGUAUAUAUGUAUGAAUUGUAUGAUGGCUAGAAACGUAUGCCAACUUCUUUUUUGCAAGGCGCAAAACCCGAAAUGGC ..-------((((((.((((((((((....))))))))))..........((((...........)))).......((((((.....))))))....)))))). ( -19.60) >DroEre_CAF1 19577 92 - 1 CAUAUUCUGCCAUUUACAUACAUAU--------AAGUAUGUA-UGUAUGAUGGCUAGAAACAUAUACCAACAACUU--UUGCAAGGCGCAAAACCCGAAAUGG- ....((((((((((((((((((((.--------...))))))-)))).)))))).)))).......(((.....((--((((.....)))))).......)))- ( -26.90) >DroYak_CAF1 19611 93 - 1 CA-------CCAUUUACAUACAAAUCUGUAUGUUAGUUUGUA-UGUAUGAUGGCUAGAAGCGUAUGCCAACUUCUU-UUUGCAAUGCGCAA-ACCCGAAAUGG- ..-------(((((((((((((((.(((.....)))))))))-)))).)))))......((((((((.((......-)).)).))))))..-...........- ( -25.20) >consensus CA_______CCAUUUACAUACAUAU_UGUAU_UAAGUAUGUA_UGUAUGAUGGCUAGAAACGUAUGCCAACUUCUU_UUUGCAAGGCGCAAAACCCGAAAUGG_ .........((((((((((((((((..........))))))).)))).))))).............(((.........((((.....)))).........))). (-12.44 = -11.67 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:43 2006