Locus 2926

Sequence ID 2L_DroMel_CAF1
Location 8,418,099 – 8,418,213
Length 114
Max. P 0.861189
window4642

overview

Window 2

Location 8,418,099 – 8,418,213
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -23.22
Consensus MFE -14.32
Energy contribution -16.16
Covariance contribution 1.84
Combinations/Pair 1.18
Mean z-score -2.16
Structure conservation index 0.62
SVM decision value 0.83
SVM RNA-class probability 0.861189
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8418099 114 - 22407834
GGUUACUUCCAAAAUGACCAUGCUUACUUACAC-----UCAUUUCCAGGAAGUAGCUGCACGAGCAUUGAUAUAUAAUUACUAUGUUGAUAAACAAAAGGCAUG-UUCCUGGAAUCUUUC
(((((.........)))))..............-----....(((((((((...(((((....))((..(((((.......)))))..))........)))...-)))))))))...... ( -24.30)
>DroSec_CAF1 16132 119 - 1
GGUUACUUCCAAAGUGACCAUGCCUACUUACACACUCAUUAUUUCCAGGAAGUAGCUGCACCAGCAUUGAUAUAAAAUUACUAUGUUGAUAAACAAAAGCCCUG-UACCUGGAAUCAUUC
(((((((.....))))))).......................(((((((.....((((...))))((..(((((.......)))))..))..............-..)))))))...... ( -27.60)
>DroSim_CAF1 15975 119 - 1
GGUUACUUCCAAAGUGACCAUGCCCACUUACACACUCAUUAUUUCCAGGAAGUAGCUGCACCAGCAUUGAUAUAUAAUUACUAUGUUGAUAAACAAAAGCCCUG-UUCCUGGAAUCAUUC
(((((((.....))))))).......................(((((((((...((((...))))((..(((((.......)))))..))..............-)))))))))...... ( -29.60)
>DroEre_CAF1 16452 110 - 1
GGUUACUUUCAAAGUCACAAUGUCUACUUUCAC--UCA----UUCCAGGAAGUAGCUAAAUCACUAUUGAUACCUAAUUACUAUGUUAAUAAACAUAAGCCCUG-UUCCUAGAAUCA---
((((....(((((((......(.((((((((..--...----.....)))))))))......))).))))...........((((((....))))))))))...-............--- ( -16.40)
>DroYak_CAF1 16287 111 - 1
GGUUACUUCCAAAGUCGCAAUGUCUACUUAGAC--UCA----UUCCAGGAAGUAGCUAAACCACUAUUAAUAUCUAAUUACUAUGUUAAUAAACAAAAUCUCUCCUUUAUAGAAUCG---
((((((((((...........((((....))))--...----.....)))))))))).......(((((((((.........)))))))))..........................--- ( -18.21)
>consensus
GGUUACUUCCAAAGUGACCAUGCCUACUUACAC__UCAU_AUUUCCAGGAAGUAGCUGCACCAGCAUUGAUAUAUAAUUACUAUGUUGAUAAACAAAAGCCCUG_UUCCUGGAAUCAUUC
(((((((.....))))))).......................(((((((((...(((.....)))(((((((((.......)))))))))...............)))))))))...... (-14.32 = -16.16 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:40 2006