Locus 2924

Sequence ID 2L_DroMel_CAF1
Location 8,417,492 – 8,417,606
Length 114
Max. P 0.726797
window4637

overview

Window 7

Location 8,417,492 – 8,417,606
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.69
Mean single sequence MFE -30.23
Consensus MFE -17.88
Energy contribution -18.56
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -2.47
Structure conservation index 0.59
SVM decision value 0.41
SVM RNA-class probability 0.726797
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8417492 114 - 22407834
CAAUAAACCAAUUUCAAAGAUACAU----UCGGUUGGCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCAAUUUGCUCAAAUUUCGGGAGUGG--GGAAAAUUCAGAAUGCAAACUCCA
......................(((----((.(((..(..(((((.((((((((...((((((.........))))))...)))))))))))))--.)..)))...)))))......... ( -26.50)
>DroSec_CAF1 15524 120 - 1
CAAUAAACCAAUUUCAAAGAUACAUUCAUUCUGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCGAUUUGCUCAAAUAUCGGGAGUGGUGGGGAAAUUCAGAAUGUAAACUCCA
....................(((((((......((.((.((((((.(((((.((.(((.((((....))))...)))....)).))))))))))).)).)).....)))))))....... ( -32.40)
>DroSim_CAF1 15369 120 - 1
CAAUAAACCAAUUUCAAAGAUACAUUCAUUCUGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCGAUUUGCUCAAAUUUCGGGAGUGGUGGGCAAAUUCAGAAUGUAAACUCCA
....................(((((((......(((((.((((((.((((((((.(((.((((....))))...)))....)))))))))))))).))))).....)))))))....... ( -40.40)
>DroEre_CAF1 15864 113 - 1
CAAUGAACUAAUUUGAAAGAUAC-U----UCGGUUGCCGACCGCUAACUGAAAUCGCAGGGAAAUAAUUCAAUUUGCUGUAAUUUCGGGAGUGG--GGGAAAUUUAAAAGGCAUGUUCCA
....((((.............((-.----...))((((..(((((..(((((((..(((.(((.........))).)))..))))))).)))))--.............)))).)))).. ( -27.86)
>DroYak_CAF1 15696 103 - 1
CAAUAAACCAAUUUCAAAGAUACAU----UCGGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCAAUUUGUUA-AAUUUCGGGAGUGG--GGAAAAUUCGGACG----------
.......((((((((..........----((((...))))(((((.((((((((...((((((.........)))))).-.)))))))))))))--.).))))).))...---------- ( -24.00)
>consensus
CAAUAAACCAAUUUCAAAGAUACAU____UCGGUUGCCGACCGCUACCUGAAAUCGCAGCGAAAUAAUUCAAUUUGCUCAAAUUUCGGGAGUGG__GGAAAAUUCAGAAUGCAAACUCCA
.......((....................(((.....)))(((((.((((((((...((((((.........))))))...)))))))))))))..))...................... (-17.88 = -18.56 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006