| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,408,165 – 8,408,261 |
| Length | 96 |
| Max. P | 0.765451 |
| Location | 8,408,165 – 8,408,261 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 72.26 |
| Mean single sequence MFE | -17.91 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.69 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8408165 96 + 22407834 GG--UUAU-UCGUGCGCAAUUACAUAC-AUUAAUAUGAUUA--ACAUAUUUUUGCGCAUUGUCCU--CGACAUACCA--G---CAUAAAUAAGAUGCCC-------AGCCAGUUCC ((--((..-..((((((((........-...((((((....--.)))))).))))))))((((..--.)))).....--(---(((.......))))..-------))))...... ( -19.10) >DroPse_CAF1 6468 95 + 1 GG--UUAU-UCGCGCGCAAUUACAUACGAUUAAUAUGAUUAAAACAUAUUUUUGCGCAAUGUCCU--CGACACACGU--G------A-ACCACAAACCA-------AUCCAGGAAC ((--(...-((((((((((............((((((.......)))))).))))))..((((..--.))))...))--)------)-))).....((.-------.....))... ( -19.12) >DroGri_CAF1 7126 102 + 1 GGUGUUAA-U-GUGCGCAAUUGCAUAC-AUUAAUAUGAUUA--ACAUAUUUUUGCGCACUCACCUGCCAACAUACCA--AGAACAGAACCACGCACUCC-------CGACCCAUCC ((((....-.-((((((((........-...((((((....--.)))))).)))))))).)))).............--....................-------.......... ( -19.00) >DroWil_CAF1 26375 100 + 1 GA--UUCUAUAUUGCGCAAUUACAUAC-AUUAAUAUGAUUA--ACAUAUUUUUGCGCAUUGUCCU--CGACAUACAA--C-------AAGAAGAACCACAAUAUUAAAGCAGAUCC ..--((((....(((((((........-...((((((....--.)))))).))))))).((((..--.)))).....--.-------.))))........................ ( -14.10) >DroAna_CAF1 6197 98 + 1 GG--UUAU-UCUUGCGCAAUUACAUAC-AUUAAUAUGAUUA--ACAUAUUGUUGCGCAUUGUCCU--UGACAUACCAUAC---CAUAACUUUAGAGCCC-------AGCCAGAUCC ((--((.(-(((((((((((.......-...((((((....--.)))))))))))))).((((..--.))))........---.........))))...-------))))...... ( -17.70) >DroPer_CAF1 6483 96 + 1 GG--UUAU-CCGCGCGCAAUUACAUACGAUUAAUAUGAUUAAAACAUAUUUUUGCGCAAUGUCCU--CGACACACGU--G------AAACCACAAACCA-------AUCCAGGAAC ((--((..-.(((((((((............((((((.......)))))).))))))..((((..--.))))...))--)------.)))).....((.-------.....))... ( -18.42) >consensus GG__UUAU_UCGUGCGCAAUUACAUAC_AUUAAUAUGAUUA__ACAUAUUUUUGCGCAUUGUCCU__CGACAUACCA__G______AAACAAGAAACCC_______AGCCAGAUCC .............((((((............((((((.......)))))).))))))..((((.....))))............................................ (-10.19 = -10.69 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:34 2006