| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,402,850 – 8,402,955 |
| Length | 105 |
| Max. P | 0.549947 |
| Location | 8,402,850 – 8,402,955 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.77 |
| Mean single sequence MFE | -27.66 |
| Consensus MFE | -21.35 |
| Energy contribution | -19.94 |
| Covariance contribution | -1.41 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8402850 105 - 22407834 CCAUAUCCAGCUGCCCUUCUCGACGGUGGCCUCCUUAAACGGCUUUCACAUGUUCUUUAAGUCGCUGGGAAUCCAACUGGAGGCCACGACGACCAGCAAACAGCA .........((((..((..(((.((.((((((((.....((((((.............)))))).(((....)))...)))))))))).)))..))....)))). ( -33.12) >DroPse_CAF1 1026 104 - 1 CCCCCCCCAGUUGCCAUUUUCAACUGUUGCUUCCCUCAACGGGUUUCACAUGUUCUUUAAAUCGCUCGGCAUUCAAUUGGAAGCGACAACGACCAGUAAACAAC- ........(((((.......)))))(((((((((.....(((((...................)))))..........))))))))).................- ( -18.17) >DroSim_CAF1 1024 105 - 1 CCUUAUCCAGCUGCCCUUCUCGACGGUGGCCUCCUUGAACGGCUUUCAUAUGUUCUUUAAGUCGCUGGGAAUCCAGCUGGAGGCGACGACGACCAGCAAACAGCA .........((((..((..(((.((.(.((((((......(((((.............)))))(((((....))))).)))))).))).)))..))....)))). ( -34.02) >DroEre_CAF1 1022 104 - 1 -CUUAUACAGCUGCCGUUUUCCACGGUGGCCUCUCUGAACGGCUUCCACAUGUUCUUUAAAUCGCUAGGGAUCCAAUUGGAGGCCACAACGACCAGCAAACAGCA -........((..((((.....))))..))..........((((((((..((.((((((......))))))..))..))))))))..........((.....)). ( -30.10) >DroYak_CAF1 974 104 - 1 -CUUAUACAGCUGCCCUUUUCCACGGUGGCCUCCCUAAACGGCUUCCAUAUGUUCUUUAAAUCGCUGGGGAUCCAACUGGAGGCCACAACGACCAGCAAGCAGCA -........(((((.((..((....(((((((((......((.((((....((..........))..)))).))....)))))))))...))..))...))))). ( -32.40) >DroPer_CAF1 1026 103 - 1 CC-CCCCCAGUUGCCAUUUUCAACUGUUGCUUCCCUCAACGGGUUUCACAUGUUCUUUAAAUCGCUCGGCAUUCAAUUGGAAGCGACAACGACCAGUAAACAAC- ..-.....(((((.......)))))(((((((((.....(((((...................)))))..........))))))))).................- ( -18.17) >consensus CCUUAUCCAGCUGCCCUUUUCAACGGUGGCCUCCCUAAACGGCUUUCACAUGUUCUUUAAAUCGCUGGGAAUCCAACUGGAGGCCACAACGACCAGCAAACAGCA .........((((............(((((((((......((.((((....((..........))..)))).))....))))))))).............)))). (-21.35 = -19.94 + -1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:32 2006