Locus 2920

Sequence ID 2L_DroMel_CAF1
Location 8,400,809 – 8,400,907
Length 98
Max. P 0.672306
window4632

overview

Window 2

Location 8,400,809 – 8,400,907
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 89.29
Mean single sequence MFE -26.19
Consensus MFE -19.78
Energy contribution -20.30
Covariance contribution 0.52
Combinations/Pair 1.29
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.29
SVM RNA-class probability 0.672306
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8400809 98 - 22407834
UUGGUUAAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGUCUCACGUCCUUCAUAUGAAACUGAGGGAGGAGUUCUUGGGGAAAUCUGGAUAG
...............(..(((((((((.((..((((.....))))..))(.(((((((........))))))).))))))))))..)........... ( -27.30)
>DroSec_CAF1 22256 98 - 1
UUGGUUCAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGCCUUACGUCCUUCAUAUGAAACUGAAGGAGGAGUUCUUGGGGAAUUCUGGACAG
...(((((..(((..(..(((((((((((......(((.(....))))...(((((((........))))))))))))))))))..)))).))))).. ( -28.70)
>DroSim_CAF1 21416 98 - 1
UUGGUUCAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGCCUUACGUCCUUCAUAUGAAACUGAAGGAGGAGUUCUUGGGGAAUUCUGGACAG
...(((((..(((..(..(((((((((((......(((.(....))))...(((((((........))))))))))))))))))..)))).))))).. ( -28.70)
>DroEre_CAF1 21480 98 - 1
UUGGGUCAUUAAUGAUUUCCAAGAUGUUUGGAAUAAAGAGGUUGCUUCACGCCCUUUAUAUGAAACUGAGGGAGGAGUUCUUGGGAAAUUCUGGACCG
...((((...(((..(((((((((.((((.(.((((((.(((........))))))))).).))))............))))))))))))...)))). ( -24.42)
>DroYak_CAF1 21936 98 - 1
UUGGGUCAUUAAUGAUUUCCAAGUAGACUGGAAUAAAGAGUUUGCCUCACGUCUUUUAUAUGAAACUGAUGGAGGAGUUCUUGAUGAAUUUUGGACCG
...((((.........(((((.......)))))..(((((....((((.((((..............))))))))..)))))...........)))). ( -21.84)
>consensus
UUGGUUCAUUAAUGAUUUCCAAGAACUUUGGAAUAAAGAGCUUGCCUCACGUCCUUCAUAUGAAACUGAAGGAGGAGUUCUUGGGGAAUUCUGGACAG
...............((((((((((((((........(((.....)))...(((((((........)))))))))))))))))))))........... (-19.78 = -20.30 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:31 2006