| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 839,209 – 839,321 |
| Length | 112 |
| Max. P | 0.994465 |
| Location | 839,209 – 839,321 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 91.12 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -22.58 |
| Energy contribution | -21.82 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.994465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 839209 112 - 22407834 CCACUUGAGUGGUGUUUGCCGCACACAAAAAAAA------AACAUCACGUACUGUGCUCGCCUUAGUCCGGCAAAUGCCAUGUUGAUAUUUUAAUAGGAUUAAAACGGAAUAAAUUUA .(((....(((((((((................)------)))))))).....))).(((..((((((((((....))).((((((....)))))))))))))..))).......... ( -27.99) >DroSec_CAF1 4192 109 - 1 CCACUUCAGUGGUGUUUGCCACACACAAA---AA------AACAUCACGUACCGUGCUCGCCUUAAUCCGGCAAAUGCCAUGUUGAUGUUUUAAUAGGAUUAAAACGGAAUAAAUUAA .(((....(((((((((............---.)------)))))))).....))).(((..((((((((((....))).((((((....)))))))))))))..))).......... ( -27.52) >DroSim_CAF1 4459 109 - 1 CCACUUGAGUGGUGUUUGCCACACACAAA---AA------AACAUCACGUACCGUGCUCGCCUUAAUCCGGCAAAUGCCAUGUUGAUGUUUUAAUAGGAUUAAAACGGAAUAAAUUAA .(((....(((((((((............---.)------)))))))).....))).(((..((((((((((....))).((((((....)))))))))))))..))).......... ( -27.52) >DroEre_CAF1 4280 114 - 1 CCACUUGAGUGCUGUUUGGCACACACAAA---AAACAUCAAACAUCACGUACCGUGCUCGCCUUAAUCC-GCAAAUGCCUAGUUGAUAUUUUAAUAGGAUUAAAACGGAAUAAAUUAU .(((....(((.(((((((..........---.....))))))).))).....))).(((..(((((((-((....))...(((((....))))).)))))))..))).......... ( -20.36) >DroYak_CAF1 3405 109 - 1 CCACUUGAGUGGUGUUUGCCACACACAAA---AA------AACAUCACGUUCCGUGCUCGCCUUAAUCCGGCAAAUGCCUAGUUGAUAUUUUAAUAGGAUUGAAACGGAAUAAAUUAU ........(((((((((............---.)------))))))))(((((((.......((((((((((....)))..(((((....))))).))))))).)))))))....... ( -29.62) >consensus CCACUUGAGUGGUGUUUGCCACACACAAA___AA______AACAUCACGUACCGUGCUCGCCUUAAUCCGGCAAAUGCCAUGUUGAUAUUUUAAUAGGAUUAAAACGGAAUAAAUUAA ........(((((....))))).......................((((...)))).(((..((((((((((....)))..(((((....))))).)))))))..))).......... (-22.58 = -21.82 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:11 2006