| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,399,276 – 8,399,378 |
| Length | 102 |
| Max. P | 0.926095 |
| Location | 8,399,276 – 8,399,378 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.41 |
| Mean single sequence MFE | -37.08 |
| Consensus MFE | -23.80 |
| Energy contribution | -26.13 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.926095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8399276 102 + 22407834 ------UCAUCCCUCUCUGGGAAGUGUGGGCGAAAGUCUAAGUGAUACCUACAAUAGAUGGCGAG---CUGGAGGUGCAAAUCUCCAGGAUCGCAUCAGUGUGGGUGAGUC-- ------(((((((.....))))....(((((....)))))..)))((((((((...((((.(((.---((((((((....))))))))..)))))))..))))))))....-- ( -45.20) >DroGri_CAF1 17755 107 + 1 CGGUGGAGGUGCACAGCUGGGCAGCGUGGGUGAAAGUCUCAGCGAGGCAUACAACAAGUGGCGUC---AAGGA---GUUGGCCAACAUGAUCGCAUCAGUGUGGGUAAGAACA ..((....((.((((.((((((..(((((((.((...(((...((.((.(((.....))))).))---...))---))).)))..))))...)).)))))))).))....)). ( -26.40) >DroSec_CAF1 20686 102 + 1 ------UCAUCCCUCUCUGGGAAGUGUGGGCGAAAGUCUAAGUGAUACCUACAAUAAAUGGCGAG---CUGGAGGUGCAAAUCCCCAGGAUCGCAUCAGUGUGGGUGAGUC-- ------(((((((.....))))....(((((....)))))..)))((((((((.......((((.---((((.((.......))))))..)))).....))))))))....-- ( -38.30) >DroEre_CAF1 19838 102 + 1 ------UCAUCCCUCCCUGGGAAGUGUGGGCGAAAGUCUGAGUGAUACCUACAAUAGGUGGCGAG---CUGGAGGUGCACAUCUCCAGGAUCGUAUCAGUGUGGGUGAGUG-- ------(((((((.....)))).....((((....))))...)))((((((((...((((.(((.---((((((((....))))))))..)))))))..))))))))....-- ( -41.30) >DroYak_CAF1 20391 102 + 1 ------UCGUCCCUCUCUGGGAAGUGUGGGCGAAAGCCUGAGUGAUACCUACAAUAGGUGGCGAG---CUGGAGGUGCAAGUCUCCAGGAUCGUAUCAGUGUGGGUGAGUC-- ------...((((.....)))).....((((....))))......((((((((...((((.(((.---(((((((......)))))))..)))))))..))))))))....-- ( -41.60) >DroAna_CAF1 19895 105 + 1 ------ACAUCCUUCUCUGGGAAGUGUCGGGGAAAGUCUAAGUGAGACGUACAAGAAGUGGCGCGGUCUUGGAGGGGCUGGUCUGCAACAACGUAUCAGUGUGGGUAAGUU-- ------..(((((((((..(((.(((((.......((((.....))))..((.....)))))))..)))..)))))((((((.((......)).))))))..)))).....-- ( -29.70) >consensus ______UCAUCCCUCUCUGGGAAGUGUGGGCGAAAGUCUAAGUGAUACCUACAAUAAGUGGCGAG___CUGGAGGUGCAAAUCUCCAGGAUCGCAUCAGUGUGGGUGAGUC__ .........((((.....))))....(((((....))))).....((((((((.......((((....((((((((....))))))))..)))).....))))))))...... (-23.80 = -26.13 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:30 2006