Locus 2918

Sequence ID 2L_DroMel_CAF1
Location 8,393,656 – 8,393,776
Length 120
Max. P 0.563020
window4630

overview

Window 0

Location 8,393,656 – 8,393,776
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.63
Mean single sequence MFE -34.23
Consensus MFE -13.60
Energy contribution -14.72
Covariance contribution 1.12
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.40
SVM decision value 0.06
SVM RNA-class probability 0.563020
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8393656 120 - 22407834
CAAAAAAAAGUACUGGGUAGAUAUCAACAGCCGUGCCAACGAUGGAGCGUCCUGGAUUUCUACACUAUCCGGAAGGGAUGUACCAUUUCUGAAAUGGAAGCCAAAUCUGGCCACAAAUAU
.............(((.(((((........((((..((..(((((.(((((((((((.........))))....))))))).)))))..))..)))).......))))).)))....... ( -31.76)
>DroSec_CAF1 15117 118 - 1
--AAAAGAACUACUGGGUGGACAUCAACAGCCGUCCCAGCGAUGGGGGGUCCUGGACUUCAACACUAUCCGGAAGGGAUGCUACAUUUCUGAAAUGGAAGCCAAAUCUGCCCGAAAAUAU
--...........((((..((........(((.(((((....))))))))..(((.((((.......(((....)))......((((.....)))))))))))..))..))))....... ( -34.10)
>DroSim_CAF1 14202 118 - 1
--AAAAGAACUACUGGGUGGACAUCAACAGCCGUCCCAGCGAUGGGGGGUCCUGGACUUCAACACUAUCCGGAAGGGAUGCUACAUUUCUGAAAUGGAAGCCAAAUCUGCCCGCAAAUAU
--............(((..((........(((.(((((....))))))))..(((.((((.......(((....)))......((((.....)))))))))))..))..)))........ ( -34.00)
>DroEre_CAF1 14396 120 - 1
CAGCAAUCAGUACUGGGUGGACAUCACCAACCGCCACGAAGAUGGGGCGCCCUUCCUUUCCGCUCUAUCCGGAAGGAAAGCUCCACUUCUGAAAUGGAAGUCCAAAAAGUCCACAAAUAC
(((.........))).((((((............((.((((.((((((....((((((.(((.......))))))))).))))))))))))...(((....)))....))))))...... ( -37.70)
>DroYak_CAF1 14453 117 - 1
CGACUAUCGCUACUGGGUGGACUUGAAUAGCCGUCCAAAAGAUGAUGGUAUCUUCACAUCUACACUAACCGGAAGGGAAGCUCCAUUUUUAAAAUGGAAGUCAAAGCAG---ACCAAUGU
.((((...(((..((((((((..((((..((((((........))))))...))))..))))).))).((....))..)))((((((.....))))))))))...(((.---.....))) ( -33.60)
>consensus
C_AAAAGAACUACUGGGUGGACAUCAACAGCCGUCCCAACGAUGGGGGGUCCUGGACUUCAACACUAUCCGGAAGGGAUGCUCCAUUUCUGAAAUGGAAGCCAAAUCUGCCCACAAAUAU
............((((((((..........(((((.....)))))((....))...........))))))))...((....((((((.....))))))..)).................. (-13.60 = -14.72 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:29 2006