| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,390,444 – 8,390,549 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 8,390,444 – 8,390,549 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -35.07 |
| Consensus MFE | -22.09 |
| Energy contribution | -24.27 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8390444 105 - 22407834 GAAAUCUUGCGUCGCGACAGCAAACUGGUGCUGGCCAGCCUCCACAAUGGCCAUCAAAUUCCGGAAGUACGGGAAUGGAUUUGUAGGAGAUAUGGUAAGCGAUAU-- ..........(((((..(((((......)))))((((..((((((((...((((....(((((......)))))))))..)))).))))...))))..)))))..-- ( -37.90) >DroSec_CAF1 12030 105 - 1 GAAGUCUUGCGUCGCGACAGCAAACUGGUGCUGGCCAGUCUCCACAAUGGCCACCAAAUUCCGGAGGUACGGGAAUGGGUUUGUAGGAGAUAUGGCAAGCGAUAU-- ..........(((((..(((((......)))))((((((((((((((.....(((...(((((......)))))...))))))).)))))).))))..)))))..-- ( -40.60) >DroSim_CAF1 11112 105 - 1 GAAGUCCUGCGUGGCGACAGCAAACUGGUGCUGGCCAGUCUCCACAAUGGCCACCAAAUUCCGGAGGUACGGGAAUGGGUGUGUAGGAGAUAUGGCAAACGAUAU-- .........(((.....(((((......)))))(((((((((((((.....((((...(((((......)))))...))))))).)))))).))))..)))....-- ( -36.70) >DroEre_CAF1 12130 105 - 1 GAAGUCCUGCGUCGCGAUCGCAAGCUGGUGCUGGCCAGCCUUCACAAUGGCCACCAAAUUCCGGAGGUACGGGAGUGGGUUUGUAGAAGAUUUGGUAAGCGAUAU-- ..........(((((...(.(((((((((....))))))((((((((.(.((((....(((((......))))))))).))))).))))..))))...)))))..-- ( -34.50) >DroYak_CAF1 12212 105 - 1 GAGGUCUUGCGUCGCGAUCCCAAACUGGUGCUGGCCAGCCUGCACAAUGGCCACCAAAUACCGGAGGUGCGGGAGUGGGCUUGUAGGAGAUUUGGCAAGCGAUAU-- ..........(((((....(((((((..(((.((((..(((((((..(((..........)))...)))))))....)))).)))..)).)))))...)))))..-- ( -38.20) >DroPer_CAF1 12003 107 - 1 AAGAUACUCAAAAAGAACAAGAAACUCGUCCUGGCUACUCUAUACAAUGGUCAUCAGGUGCCGGAGCUACGCGAAUGGAUAAGGCGGCGCUACGGCAAACGCUAUAC ..........................((((((((..((.(........)))..)))))(((((.(((..(((...........)))..))).))))).)))...... ( -22.50) >consensus GAAGUCCUGCGUCGCGACAGCAAACUGGUGCUGGCCAGCCUCCACAAUGGCCACCAAAUUCCGGAGGUACGGGAAUGGGUUUGUAGGAGAUAUGGCAAGCGAUAU__ ..........(((((..(((((......)))))((((..((((((((...((((....(((((......)))))))))..)))).))))...))))..))))).... (-22.09 = -24.27 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:24 2006