Locus 2913

Sequence ID 2L_DroMel_CAF1
Location 8,387,861 – 8,387,963
Length 102
Max. P 0.659882
window4622

overview

Window 2

Location 8,387,861 – 8,387,963
Length 102
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 84.59
Mean single sequence MFE -22.40
Consensus MFE -20.91
Energy contribution -20.38
Covariance contribution -0.52
Combinations/Pair 1.29
Mean z-score -1.35
Structure conservation index 0.93
SVM decision value 0.27
SVM RNA-class probability 0.659882
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8387861 102 + 22407834
UCCAAUUAUCAUCGUAUU--------UUAUUUCACAGUCCUGCUGGCCACCUGCAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCCGUCAGCAGCUCAGCUUU
..................--------..........(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... ( -25.50)
>DroSec_CAF1 9488 102 + 1
UCCAAUUAUCAUCGUAUU--------UUAUGUCACAGUCCUGCUGGCCACCUGUAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCUGUCAGCAGUUCAGCUUU
..................--------..........(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... ( -23.80)
>DroSim_CAF1 8621 102 + 1
UCCAAUUAUCAUCGUAUU--------UUAUUUCACAGUCCUGCUGGCCACCUGUAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCUGUCAGCAGCUCAGCUUU
..................--------..........(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... ( -22.90)
>DroEre_CAF1 9514 102 + 1
UUUAAUCACUAUCGUAUU--------UUAUUUUACAGUCUUGCUAGCCACCUGCAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCUGUCAGCAGCUCAGCUUU
.............(((..--------......)))....((((((((...........((......))............))))))))((((((....))))))...... ( -20.00)
>DroYak_CAF1 9611 102 + 1
CCCAAUCUUCAUCGCAUU--------UUCUUUAACAGUUUUGCUAGCCACCUGCAUUCCCAACCUGGGCUCCAUUAUCUCGCUGGUAGGUGCCGUCAGCAGCUCAGCUUU
..................--------..........(..(((((..((((((((...(((.....))).........(.....))))))))..)..)))))..)...... ( -18.90)
>DroPer_CAF1 9211 109 + 1
UCCCCUUCUAAU-AUAUUCUGUUUAUUCCUUACACAGUUCUGUUGGCCACCUGCAUUCCCAAUCUGGGCUCUAUUAUUUCGUUGGUGGGAGCCGUCAGCAGCUCUGCAUU
............-.....................(((..((((((((....((......)).....((((((((((......)))).))))))))))))))..))).... ( -23.30)
>consensus
UCCAAUUAUCAUCGUAUU________UUAUUUCACAGUCCUGCUGGCCACCUGCAUUCCCAAUCUAGGCUCCAUUAUCUCGCUGGUAGGAGCCGUCAGCAGCUCAGCUUU
....................................(..((((((((....((......)).....((((((..((((.....))))))))))))))))))..)...... (-20.91 = -20.38 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006