| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,375,636 – 8,375,753 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 8,375,636 – 8,375,753 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -42.41 |
| Consensus MFE | -14.42 |
| Energy contribution | -15.15 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.34 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8375636 117 - 22407834 CGCCCGCAAUUGGUGGUGGCCAAUAAGCUGGACGUGGAAGAGGGCCAAAACAACUUUGAGGAACUGCAACGUCGCCUGCAAAAUCCCG---UGCUCGGCAUUAGUGCCAAAAUGGGUCAU .(((((((....((..(((((......((......)).....)))))..))......(.(((..((((........))))...)))).---)))..((((....)))).....))))... ( -32.50) >DroPse_CAF1 1964 117 - 1 CGGCCGCAGCUGGUGGUGGCAAAUAAAAUCGACAUGGAAGACAGUGCCGCCAACUUUGAGGAACUGCAGCGAAGGCUGCAGAAUCCUG---UGCUCGGGAUUAGUGCCAAAAUGGGCCAA .((((.((..(((((((((((.......((......))......))))))).(((........(((((((....)))))))(((((((---....))))))))))))))...)))))).. ( -50.42) >DroEre_CAF1 1111 117 - 1 CGGCCGCAAUUGGUGGUGGCCAAUAAGCUGGACGUGGAAGAGAGCCAAAGCAACUUUGAGGAACUUCAGCGUCGCCUGCAAAAUCCCG---UGCUUGGCAUUAGUGCCAAAAUGGGUCAC .((((((........)))))).....((.((((((.((((.....(((((...))))).....)))).))))).)..)).....((((---(..((((((....)))))).))))).... ( -41.60) >DroMoj_CAF1 1073 120 - 1 CGUCCGCACCUGGUUGUGGCCAACAAAAUGGAUGUGGAAUCGAGUGCGAGUAAUUUUGAGCAAUUGCAGCAGCAGCUGCAGCACCCGGAAUUACUCGGCAUCAGCGCAAAAAUGGGGCAC ..((((((((...((((.....))))...)).))))))...((.((((((((((((((.(...(((((((....)))))))...)))))))))))).))))).((.(.......).)).. ( -42.80) >DroAna_CAF1 1105 117 - 1 CGCCCGCAGCUGGUGGUAGCCAACAAACUGGAUAAAGAUGAGGGCGAGGCCAACUUUGAAGAGCUGCAAAGAAGACUACAGAAUCCAG---UACUUGGCAUCAGUGCCAAGAUGGGCAAG .(((((..(((((((((.(((..((..((......)).))..)))...)))).(((((........))))).............))))---).(((((((....))))))).)))))... ( -40.40) >DroPer_CAF1 2503 117 - 1 CGGCCGCAGUUGGUGGUGGCAAAUAAAAUCGACAUGGAAGACAGCGCCGCCAACUUUGAGGAACUGCAGCGAAGGCUGCAGAAUCCUG---UGCUCGGGAUUAGUGCCAAAAUGGGUCAA .((((..(((((((((((..........................)))))))))))....((..(((((((....)))))))(((((((---....)))))))....))......)))).. ( -46.77) >consensus CGGCCGCAGCUGGUGGUGGCCAAUAAAAUGGACAUGGAAGAGAGCGAAACCAACUUUGAGGAACUGCAGCGAAGGCUGCAGAAUCCCG___UGCUCGGCAUUAGUGCCAAAAUGGGUCAA .((((.((.....(((((.(((......)))..........((((.....((....)).....((((((......))))))...........))))........)))))...)))))).. (-14.42 = -15.15 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:18 2006