Locus 2909

Sequence ID 2L_DroMel_CAF1
Location 8,371,558 – 8,371,653
Length 95
Max. P 0.500000
window4616

overview

Window 6

Location 8,371,558 – 8,371,653
Length 95
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 72.46
Mean single sequence MFE -19.38
Consensus MFE -11.81
Energy contribution -12.77
Covariance contribution 0.96
Combinations/Pair 1.15
Mean z-score -1.40
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8371558 95 + 22407834
AUUUAAUUCAGUCCGAAAACAAAUAUAUUCC-----------------AAGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGA
...................((((((((((..-----------------((((((...((((((....(((((......)))))))))))...))))))...)))))))))). ( -22.30)
>DroSec_CAF1 15354 99 + 1
AUUUAAUGCAUUGAGAAAACAAAUAUAUUCCAUCC-------------AAGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGG
...................((((((((((......-------------((((((...((((((....(((((......)))))))))))...))))))...)))))))))). ( -20.90)
>DroSim_CAF1 14668 112 + 1
AUUUAAUGCAUUGAGAAAACAAAUAUAUUCCAUCCGUGUUAACUAAACACGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGA
...................((((((((((......(((((.....)))))((((...((((((....(((((......)))))))))))...)))).....)))))))))). ( -24.10)
>DroEre_CAF1 14352 78 + 1
-----------------AAAAAAUAUGUACC-----------------AAGCCAAACUUCAACUUCUGUUCCAAUUUAGGGACAUUGGACUGUAGCUUACAAAUGUGUUUCA
-----------------...((((((((...-----------------((((.....(((((....((((((......))))))))))).....))))....)))))))).. ( -13.40)
>DroYak_CAF1 14310 77 + 1
-----------------AA-AAAUAUAUAUU-----------------AAGCUUAACUUUAACUUUGGGUUCAGUUUAGGGACGUUGGACUGUAGCUUACAAGUGUGCUUGA
-----------------..-.........((-----------------((((...((((......((((((((((((((.....)))))))).)))))).))))..)))))) ( -16.20)
>consensus
AUUUAAU_CA_U__GAAAACAAAUAUAUUCC_________________AAGCUAAACUUUAACUUUUGUUCCCACUUAGGGACGUUGGACUGUAGCUUACAAGUGUGUUUGA
...................(((((((((....................((((((...((((((....(((((......)))))))))))...))))))....))))))))). (-11.81 = -12.77 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006