| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,354,187 – 8,354,289 |
| Length | 102 |
| Max. P | 0.722061 |
| Location | 8,354,187 – 8,354,289 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.08 |
| Mean single sequence MFE | -17.09 |
| Consensus MFE | -1.06 |
| Energy contribution | -2.58 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.06 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722061 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8354187 102 + 22407834 UUCUUCAACCUCCGAUUCUACAACAGAUUCGUCGACUGCUUCCUCCACCACAAUUGGAGAUU---------CUAGCAGCAG------CUCUUUGG---GUUCUUCCACAUCAGAUUCCUC ......(((((.(((.(((.....))).)))..(.(((((..(((((.......)))))...---------..))))))..------......))---)))................... ( -19.10) >DroSim_CAF1 19898 102 + 1 UUCUUCAACCUCCGAUUCUACAACCGAAUCGUCGACUGAUUCCUCCACCACAAAUGCAGAUU---------CUAGCACCAG------CUCUUUGG---GCUCUUCCACGUCUGAUUCUUC ....(((..(..((((((.......))))))..)..))).................(((((.---------..(((.((((------....))))---))).......)))))....... ( -16.60) >DroEre_CAF1 21580 102 + 1 UUCUUCAACCUCCGAUUCUACAACAGAUUCGUCGACUGCUUCCUCCACAACAAAUGAUGAUU---------CUAGCAGUAG------CUCUUUGG---GUUCUUCCACAACAGAUUCUUC .........(..(((.(((.....))).)))..)((((((.....((((.....)).))...---------..))))))..------.(((((((---(.....)).))).)))...... ( -14.80) >DroWil_CAF1 33600 114 + 1 AUCCUCAACAUCCGAU---ACAACUGAA--GACGACU-CUUCUUCGUCAAGUAAUGAUGACUCUUCUUCGUCUAGCACAACUGAAUCCACUUCGGAAAGUUCACCAAAUACUGAAUCCUC ..........(((((.---........(--(((((..-.....((((((.....)))))).......))))))........((....))..)))))..(((((........))))).... ( -18.34) >DroYak_CAF1 22221 102 + 1 UUCUUCAACCUCCGAUUCUACAACAGAUUCUUCGACAGCCUCCUCCACCACAAAUGGAGAUU---------CUAGCUCCAG------UUCUUUGG---CUUCUUCCUCUACAGAGUCCUC .............((((((......((....))((.((((..(((((.......)))))...---------..(((....)------))....))---)))).........))))))... ( -16.60) >consensus UUCUUCAACCUCCGAUUCUACAACAGAUUCGUCGACUGCUUCCUCCACCACAAAUGAAGAUU_________CUAGCACCAG______CUCUUUGG___GUUCUUCCACAACAGAUUCCUC .((((((......((.(((.....))).))((.((........)).))......))))))............................................................ ( -1.06 = -2.58 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:10 2006