Locus 2901

Sequence ID 2L_DroMel_CAF1
Location 8,341,011 – 8,341,116
Length 105
Max. P 0.595679
window4607

overview

Window 7

Location 8,341,011 – 8,341,116
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 77.84
Mean single sequence MFE -42.77
Consensus MFE -21.50
Energy contribution -22.33
Covariance contribution 0.84
Combinations/Pair 1.26
Mean z-score -1.91
Structure conservation index 0.50
SVM decision value 0.13
SVM RNA-class probability 0.595679
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8341011 105 + 22407834
UCACGGCCAGGAUGCGGAGGAGGAUGACGAAAUCUCCGCAGAGGAUGCGUUCUUCUGCGGCAUCUGUAAAUCGCAUCGCUGCAAUGGUGCGGCGGCCGUAACGCU
..((((((..(((((((....(((((.........((((((((((.....))))))))))))))).....)))))))((((((....))))))))))))...... ( -52.20)
>DroPse_CAF1 9509 105 + 1
CUAUGGCCAGGAAUCGGCCGAUAAUGACGAGGAAUCGGAGGAGGAUACCUUCUUCUGUGACAUUUGCAGAUCGGAUCGGUGCAACGGGGCCGCGGCAGUGACGUU
....((((.(..((((((((((..((.((((....(((((((((....))))))))).....)))))).))))).)))))....)..))))(((.......))). ( -35.40)
>DroSim_CAF1 8740 105 + 1
CCACGGCCAGGAUGCGGAGGAGGACGACGAAAUCUCCGCGGAGGAUGCGUUCUUCUGCGGCAUCUGCAAAUCGCAUCGGUGCAAUGGUGCGGCGGCCGUAACGCU
..((((((.((((((.((((((((((.((...((((....)))).))))))))))).).)))))).....((((((((......)))))))).))))))...... ( -48.20)
>DroYak_CAF1 8938 105 + 1
GCACGGCCAGGAUGCGGAUGCAGACGAGGAGAUCUCCGCGGAGGAUGCGUUCUUCUGCGACAUCUGCAAAUCGCAUCGCUGCAAUGGUGCGGCGGCCGUAACGCU
((((((((..(((((((.((((((.(.(((....)))((((((((.....))))))))..).))))))..)))))))((((((....))))))))))))...)). ( -55.80)
>DroMoj_CAF1 16437 96 + 1
CUAUGGCCAGGAUGCGGAUGAGAA---------GGCGCCGGAGGAGGAGUUCUUCUGUGACAUUUGCAAAACGGAUCGCUGCAACGGGGCGGCUGCAGUGACGCU
....(((.....((((((((((((---------(((.((......)).).))))))....)))))))).......((((((((.((...))..)))))))).))) ( -29.60)
>DroPer_CAF1 9521 105 + 1
CUAUGGCCAGGAAUCGGCCGAUAAUGACGAGGAAUCGGAGGAGGAUACCUUCUUCUGUGACAUUUGCAGAUCGGAUCGGUGCAACGGGGCCGCGGCAGUGACGUU
....((((.(..((((((((((..((.((((....(((((((((....))))))))).....)))))).))))).)))))....)..))))(((.......))). ( -35.40)
>consensus
CCACGGCCAGGAUGCGGACGAGAAUGACGAGAUCUCCGCGGAGGAUGCGUUCUUCUGCGACAUCUGCAAAUCGCAUCGCUGCAACGGGGCGGCGGCAGUAACGCU
..((.(((..((((((..((((...........))))((((((((.....)))))))).............))))))(.(((......))).)))).))...... (-21.50 = -22.33 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:06 2006