Locus 2900

Sequence ID	2L_DroMel_CAF1
Location	8,329,924 – 8,330,024
Length	100
Max. P	0.816947

overview

Window 5

Location	8,329,924 – 8,330,024
Length	100
Sequences	6
Columns	103
Reading direction	forward
Mean pairwise identity	79.99
Mean single sequence MFE	-24.43
Consensus MFE	-12.18
Energy contribution	-13.15
Covariance contribution	0.97
Combinations/Pair	1.14
Mean z-score	-2.54
Structure conservation index	0.50
SVM decision value	0.67
SVM RNA-class probability	0.816947
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8329924 100 + 22407834
AUUGAAAAUCACUUUCAAUGUA-GUGUAAUACAAAAGGCCAAUUGGU-UGGCCAACACUUUAGUGAUUGUCAAAAUUGGUU-UUUCGCCAAUUGAUUGAUUUU
.((((.(((((((.....((((-......))))...((((((....)-)))))........))))))).))))(((((((.-....))))))).......... ( -27.90)
>DroSec_CAF1 8764 100 + 1
AUUGAAAAUCACUUUCAAUGUA-UUUUCGUACAAAAGGCCAAUUGGU-UGGCCAACACUUUAGAGAUUGUCAAAAUUGGUU-UUUCGCCAAUUGAUUGAUUUU
....(((((((.((((..((((-(....)))))...((((((....)-))))).........))))..((((..((((((.-....))))))))))))))))) ( -23.90)
>DroSim_CAF1 9365 101 + 1
AUUGAAAAUCACUUUCAAUGUA-UUUUCGUACAAAAGGCCAAUUGGUUUGGCCAACACUUUAGAGAUUGUCAAAAUUGGUU-UUUCGCCAAUUGAUUGAUUUU
....(((((((.((((..((((-(....)))))...((((((.....)))))).........))))..((((..((((((.-....))))))))))))))))) ( -24.40)
>DroEre_CAF1 9410 97 + 1
AUUGAAAAUCACUUUCGCUACAUGGCUAUUACAAAAGACCAAUUG------GCAACACUUUGGGGAUUGUUCCAAUGGGUCCGUUCGCCCAUUGAUUGAUUUU
....((((((((..(((((....)))............((((.((------....))..)))).))..))..((((((((......))))))))...)))))) ( -24.70)
>DroYak_CAF1 9510 99 + 1
AUUGAAAAUCACUUUCAAUGUA-GCCUACUACAAAAGACCAAUUGCU-UGGCCAACACUUUAGAGAUUGUCAAAAUUGGUU--UUGGCCAAUCGAUUGAUUUU
.((((((.....))))))((((-(....))))).((((.((((((.(-(((((((.(((.....((((.....))))))).--)))))))).)))))).)))) ( -26.20)
>DroAna_CAF1 9163 99 + 1
AAUAAAAGCCACCUUCAACUUG-GUCCAAAACAAUAAGCCAAUUGAU-UGGCCAACACUUUACAGAUGUUUGGCUUUUGUU--UUUGCAAAUUGAUUGAUUUU
(((((((((((((........)-))...(((((....(((((....)-)))).....((....)).)))))))))))))))--.................... ( -19.50)
>consensus
AUUGAAAAUCACUUUCAAUGUA_GUCUAAUACAAAAGGCCAAUUGGU_UGGCCAACACUUUAGAGAUUGUCAAAAUUGGUU_UUUCGCCAAUUGAUUGAUUUU
....(((((((...((....................(((((.......)))))....................(((((((......))))))))).))))))) (-12.18 = -13.15 +   0.97)

alignment

secondary structure

dotplot

Window 6

Location	8,329,924 – 8,330,024
Length	100
Sequences	6
Columns	103
Reading direction	reverse
Mean pairwise identity	79.99
Mean single sequence MFE	-22.87
Consensus MFE	-11.87
Energy contribution	-11.98
Covariance contribution	0.12
Combinations/Pair	1.30
Mean z-score	-2.45
Structure conservation index	0.52
SVM decision value	0.67
SVM RNA-class probability	0.816836
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8329924 100 - 22407834
AAAAUCAAUCAAUUGGCGAAA-AACCAAUUUUGACAAUCACUAAAGUGUUGGCCA-ACCAAUUGGCCUUUUGUAUUACAC-UACAUUGAAAGUGAUUUUCAAU
..........((((((.....-..))))))((((.(((((((..(((((.(((((-(....))))))...((.....)).-.)))))...))))))).)))). ( -24.40)
>DroSec_CAF1 8764 100 - 1
AAAAUCAAUCAAUUGGCGAAA-AACCAAUUUUGACAAUCUCUAAAGUGUUGGCCA-ACCAAUUGGCCUUUUGUACGAAAA-UACAUUGAAAGUGAUUUUCAAU
..........((((((.....-..))))))((((.((((.((..(((((.(((((-(....))))))((((....)))).-.)))))...)).)))).)))). ( -20.90)
>DroSim_CAF1 9365 101 - 1
AAAAUCAAUCAAUUGGCGAAA-AACCAAUUUUGACAAUCUCUAAAGUGUUGGCCAAACCAAUUGGCCUUUUGUACGAAAA-UACAUUGAAAGUGAUUUUCAAU
..........((((((.....-..))))))((((.((((.((..(((((.((((((.....))))))((((....)))).-.)))))...)).)))).)))). ( -21.10)
>DroEre_CAF1 9410 97 - 1
AAAAUCAAUCAAUGGGCGAACGGACCCAUUGGAACAAUCCCCAAAGUGUUGC------CAAUUGGUCUUUUGUAAUAGCCAUGUAGCGAAAGUGAUUUUCAAU
((((((.....(((((((((.(((((.(((((((((..........)))).)------)))).)))))))))).....))))...((....)))))))).... ( -24.80)
>DroYak_CAF1 9510 99 - 1
AAAAUCAAUCGAUUGGCCAA--AACCAAUUUUGACAAUCUCUAAAGUGUUGGCCA-AGCAAUUGGUCUUUUGUAGUAGGC-UACAUUGAAAGUGAUUUUCAAU
..........((((((....--..))))))((((.((((.((........(((((-(....))))))...(((((....)-)))).....)).)))).)))). ( -24.10)
>DroAna_CAF1 9163 99 - 1
AAAAUCAAUCAAUUUGCAAA--AACAAAAGCCAAACAUCUGUAAAGUGUUGGCCA-AUCAAUUGGCUUAUUGUUUUGGAC-CAAGUUGAAGGUGGCUUUUAUU
(((..((.((((((((..((--(((((((((((((((.((....)))))(((...-.))).))))))).)))))))....-))))))))...))..))).... ( -21.90)
>consensus
AAAAUCAAUCAAUUGGCGAAA_AACCAAUUUUGACAAUCUCUAAAGUGUUGGCCA_ACCAAUUGGCCUUUUGUACUAGAC_UACAUUGAAAGUGAUUUUCAAU
(((((((.((((((((........))))))....................(((((.......)))))....................))...))))))).... (-11.87 = -11.98 +   0.12)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:05 2006