Locus 290

Sequence ID 2L_DroMel_CAF1
Location 833,132 – 833,227
Length 95
Max. P 0.868146
window461

overview

Window 1

Location 833,132 – 833,227
Length 95
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 93.55
Mean single sequence MFE -10.20
Consensus MFE -9.70
Energy contribution -9.32
Covariance contribution -0.39
Combinations/Pair 1.10
Mean z-score -1.12
Structure conservation index 0.95
SVM decision value 0.86
SVM RNA-class probability 0.868146
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 833132 95 + 22407834
AAUUUAUGGUAAUUUA-AACAAUUGCUAAA--C-CA---ACUAGUACUAAAGACG-AAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA
.(((((((((((((..-...)))))))...--.-..---.(((((..........-..........)))))........(((...)))..))))))....... (  -8.95)
>DroVir_CAF1 25677 102 + 1
AAUUUAUAGUAAUUUCA-ACAAUUGCUAAAACCACAACAACUAGUACUAAAAACGAAAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA
.((((((.((((((((.-.....(((((.............))))).......(....)...........)))))))).(((...)))..))))))....... ( -12.12)
>DroPse_CAF1 21187 96 + 1
AAUUUAUGGUAAUUUC-AACAAUUGCUAAA--C-CA--AACUAGUACUAAAGACG-ACGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA
.((((((.((((((((-......(((((..--.-..--...))))).........-...((......)).)))))))).(((...)))..))))))....... ( -10.60)
>DroYak_CAF1 19626 95 + 1
AAUUUAUAGUAAUUUA-AACAAUUGCUAAA--C-CA---ACUAGUACUAAAGACG-AAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA
.(((((((((((((..-...))))))))..--.-..---.(((((..........-..........)))))........(((...)))...)))))....... (  -9.25)
>DroAna_CAF1 20033 94 + 1
AAUUUAUAGUAAUUUA-AACGAUUGCUAAA--C-CA---ACUAGUACUAAAGACG-AAGAGAACAAACUAGAAAUUAUACCGAAACGGACAUGAAUAA-AAUA
.(((((((((((((..-...))))))))..--.-..---.(((((..........-..........)))))........(((...)))...)))))..-.... (  -9.65)
>DroPer_CAF1 20449 96 + 1
AAUUUAUGGUAAUUUC-AACAAUUGCUAAA--C-CA--AACUAGUACUAAAGACG-ACGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA
.((((((.((((((((-......(((((..--.-..--...))))).........-...((......)).)))))))).(((...)))..))))))....... ( -10.60)
>consensus
AAUUUAUAGUAAUUUA_AACAAUUGCUAAA__C_CA___ACUAGUACUAAAGACG_AAGAGAACAAACUAGAAAUUAUACCGAAACGGAAAUGAAUAAAAAUA
.(((((((((((((......))))))))............(((((.....................)))))........(((...)))...)))))....... ( -9.70 =  -9.32 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:09 2006