Locus 29

Sequence ID	2L_DroMel_CAF1
Location	116,209 – 116,320
Length	111
Max. P	0.522358

overview

Window 4

Location	116,209 – 116,320
Length	111
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	84.21
Mean single sequence MFE	-25.93
Consensus MFE	-15.48
Energy contribution	-17.17
Covariance contribution	1.69
Combinations/Pair	1.22
Mean z-score	-1.91
Structure conservation index	0.60
SVM decision value	-0.02
SVM RNA-class probability	0.522358
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 116209 111 + 22407834
AAUAGACAACUGUGC-GCCAAUCCACAGCGACGGCAGUUGUUCAAAUAAUUUCCAUAAUUAACUUUGUCGGUUUUUAUUGUGACGGCUCAU----AUCACAAUUGAUAGAGCUACC
....(((((((((.(-((.........)))...)))))))))...........((((((.((((.....))))...))))))..(((((.(----((((....))))))))))... ( -28.60)
>DroSim_CAF1 11227 112 + 1
AAUAGACAACUGUGCCACCAAUCCACAGCGGCGGCAAUUGUUCAAAUAAUUUCCAUAAUUAACUUUGUCGGUUUUUAUUGUGACGCCACAU----AUCACAAUUUAUAGAACUACC
....(((((..(((((.(.........).)))((.((((((....)))))).)).......)).)))))((((((.(((((((........----.)))))))....))))))... ( -21.90)
>DroEre_CAF1 11286 116 + 1
AAUAGACAACUGUGCCACUAAUCCCCAGCGGCGACAGUUGUUUAAAUAAUUACCGUAAUAAACUUUGGCGGCUUAUAUUGGGACGUCACAUAUGUAUCACAAUUGAUAGAGCCACC
..((((((((((((((.((.......)).))).)))))))))))......................((.(((((..((((((((((.....)))).)).)))).....))))).)) ( -30.90)
>DroYak_CAF1 10427 112 + 1
AAUAGACAACAGUGGCGACCAUACCCAGUGGCGACAGUUGUUCAAACAAUUUCCAUAAUUAACUUUGGCGGUUUUUAUUGUUACGCCACAU----AUCACAAUUGAUAAAGCUUCC
...........((((((..........((((....((((((....)))))).)))).........(((((((....))))))))))))).(----((((....)))))........ ( -22.30)
>consensus
AAUAGACAACUGUGCCACCAAUCCACAGCGGCGACAGUUGUUCAAAUAAUUUCCAUAAUUAACUUUGGCGGUUUUUAUUGUGACGCCACAU____AUCACAAUUGAUAGAGCUACC
....((((((((((((((.........))))).)))))))))...........................((((((.(((((((.............)))))))....))))))... (-15.48 = -17.17 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:41 2006