Locus 2897

Sequence ID 2L_DroMel_CAF1
Location 8,324,565 – 8,324,661
Length 96
Max. P 0.826284
window4601

overview

Window 1

Location 8,324,565 – 8,324,661
Length 96
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -26.67
Consensus MFE -16.01
Energy contribution -17.07
Covariance contribution 1.06
Combinations/Pair 1.19
Mean z-score -1.64
Structure conservation index 0.60
SVM decision value 0.70
SVM RNA-class probability 0.826284
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8324565 96 - 22407834
GCA--AACUUUUUUCUCUACUUCAGUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGG---------AAAAAAAGGAAAAUUGAGAAGGAU-GAAGAGGGGAAG
...--..((((((((....((((.(((((.(((.....))))))))((((((((......))---------))))))...........))))...-)))))))).... ( -29.40)
>DroSec_CAF1 4023 97 - 1
GCA--AACUUUUUUCUCUACUUCAGUUGCUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGG-G-------AAAAAACGGAAAUAUGAGAAGGAU-GUGGAGGGGGAG
...--....(((..((((((((((((((.((((.....)))))))))((((((((.....))-)-------)))))...............))).-))))))..))). ( -31.80)
>DroSim_CAF1 4053 98 - 1
GCA--AACUUUUUUCUCUACUUCAGUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGGGG-------AAAAAACGGAAAUAUGAGAAGGAU-GUGGAGGGGGAG
...--....(((..(((((((((((((((.(((.....)))))))))((((((((......)))-------)))))...............))).-))))))..))). ( -31.60)
>DroEre_CAF1 4024 91 - 1
GGA--AACUUUUUUCUCUACUUCAUUGGUUGGCUCUCUGCCGCAGCUUUUUUCCUGAGCUGG-G-------AAG---AGGAAAAAUGAGAAGGAU-GAGUAGC---AG
(..--..)......(((..((((..(.(((...(((((.((.((((((.......)))))))-)-------.))---)))...))).)))))...-)))....---.. ( -23.90)
>DroYak_CAF1 4145 80 - 1
GGA--AACUUUUUCCUCUACUUCAUUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGC-G-------AAA---AUGAAAAAUGGGGCGG---------------
(..--..).....((((...(((((((..((((.....))))((((((.......)))))).-.-------.))---)))))....))))...--------------- ( -22.10)
>DroAna_CAF1 4254 95 - 1
GUAACAAUUUUUUUCUCUACUUCAUU---UGGCUCUCUGCCACAGCUUUUU--CUAAGGGUG-UACCACAUAAAAAUAGGAAAA-UA----GGAUUGGGGAAGGGG--
.........((((((((((.(((...---((((.....))))....(((((--(((...(((-.....))).....))))))))-..----))).)))))))))).-- ( -21.20)
>consensus
GCA__AACUUUUUUCUCUACUUCAGUUGUUGGCUCUCUGCCACAGCUUUUUUCCUGAGCUGG_G_______AAAAAAAGGAAAAAUGAGAAGGAU_GAGGAGGGGGAG
.........((((((((...(((......((((.....))))((((((.......))))))..................)))....)))))))).............. (-16.01 = -17.07 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006