Locus 2896

Sequence ID 2L_DroMel_CAF1
Location 8,320,487 – 8,320,584
Length 97
Max. P 0.692781
window4600

overview

Window 0

Location 8,320,487 – 8,320,584
Length 97
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 76.21
Mean single sequence MFE -27.23
Consensus MFE -10.23
Energy contribution -10.98
Covariance contribution 0.75
Combinations/Pair 1.13
Mean z-score -2.29
Structure conservation index 0.38
SVM decision value 0.33
SVM RNA-class probability 0.692781
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8320487 97 - 22407834
UAAACAAUUGGAUUGCUUGCCCAGUCAGAAGGGUUUAGCCGU--UCGGCACUUACCUCCUCCUGGUUGUAGGUGCCCUCUUGUGCUUUCAGCAUCAAAC
.........((((.(((.((((........))))..))).))--))(((((((((..((....))..)))))))))...((((((.....))).))).. ( -33.80)
>DroSec_CAF1 81 84 - 1
UAAACAAUUGGAUUGUUUGCACAGUCAGAAGG---------------GCACUUACCUCCUCCUGAUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAGC
..........((((((....))))))...(((---------------((((((((.((.....))..)))))))))))(((((((.....)).))))). ( -26.90)
>DroSim_CAF1 80 84 - 1
UAAACAAUUGGAUUGCUUGCACAGUCAGAAGG---------------GCACUUACCUCCUCCUGAUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAGC
..............(((((.((((((((.(((---------------(........)))).)))))))).((.((((....))))..)).....))))) ( -26.00)
>DroEre_CAF1 80 97 - 1
UAAACAAUUAGAUGGUUUGCCCAGUCAAAAGGGCUUAGCCAU--CUCGCACUCACCUUCUCCUGGUUGUAGGCGCCCUCCUGGGCUUUCAGCAUCAAAC
.........((((((((.((((........))))..))))))--)).((.((((((.......)).)).))))((((....)))).............. ( -31.20)
>DroYak_CAF1 80 97 - 1
UAAACAAUUAGAUUGUUGGCCCAGUCAGAAGGGCUAAGCCAU--CCGGCACUCACCUCCUCCUGGUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAAC
..........(((.((((((((........)))).(((((..--..(((((..((..((....))..))..)))))......))))).))))))).... ( -33.30)
>DroAna_CAF1 80 88 - 1
UAAAUAUUGUGAAGG-----CCACUCAUG------CAGCAGUCACCGGCACUUACUUCCUGUUCAUUAUAGCUUCCCUCUUGUGCUUUUAGCAUCAAAC
........((((..(-----(..(....)------..))..)))).(((((.........(((......))).........)))))............. ( -12.17)
>consensus
UAAACAAUUGGAUUGUUUGCCCAGUCAGAAGG____AGCC_U__CCGGCACUUACCUCCUCCUGAUUGUAGGUGCCCUCUUGGGCUUUCAGCAUCAAAC
..........(((((......))))).....................((...........((((....)))).((((....)))).....))....... (-10.23 = -10.98 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:59 2006