Locus 2894

Sequence ID 2L_DroMel_CAF1
Location 8,317,436 – 8,317,533
Length 97
Max. P 0.759237
window4597

overview

Window 7

Location 8,317,436 – 8,317,533
Length 97
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.70
Mean single sequence MFE -22.38
Consensus MFE -12.46
Energy contribution -12.68
Covariance contribution 0.22
Combinations/Pair 1.06
Mean z-score -2.10
Structure conservation index 0.56
SVM decision value 0.50
SVM RNA-class probability 0.759237
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8317436 97 - 22407834
CCAAUCCAAGGUAUCAGUAUGAGU-UGGCCAUUUAAUGAACUAAUG--UACUAAUCACACUGGUCUCAUUCGGGCACUAAUCUCAUAUAUA-U-AACCU-AUU----
........((((....(((((((.-.((((....(((((((((.((--(.......))).)))).)))))..))).)....)))))))...-.-.))))-...---- ( -22.10)
>DroVir_CAF1 609 90 - 1
CCAUGCCAAGGUAUUAGUAUGAGUUUUGCCAUUAUAUGGACUAAUG--UACUAAUC--ACUGGUCUCAU-CGGGCACUAAUCUCAUA--UA-U---------CAAUA
..((((....))))..(((((((...((((.....((((((((.((--.......)--).))))).)))-..)))).....))))))--).-.---------..... ( -21.30)
>DroGri_CAF1 277 96 - 1
CAAUUGCCAGGUAUUAGUAAGAGU-UUGCCGUUGUAUGGACUAAUGAACACUAAUC--ACUGGUCUCAU-CGGGCACUAAUCUCAUA--UA-CUAAUCUCACU----
.........(..(((((((.(((.-.((((..((.((((((((.(((.......))--).))))).)))-)))))).....)))...--))-)))))..)...---- ( -21.20)
>DroEre_CAF1 229 93 - 1
CCAAUACAAGGUAUCAGUAUGAGU-GGGCCAUUUAAUGGACUAAUG--UACUAAUC--ACUGGUCUCAUUCGGGCACUAAUCUCAUA--UA-C-AACAU-AUU----
................((((((((-(((((....(((((((((.((--.......)--).))))).))))..))).)))..))))))--).-.-.....-...---- ( -21.60)
>DroYak_CAF1 229 94 - 1
CCAUUCCAAGGUAUCAGUAUGAGU-GGGCCAUUUAAUGGACUAAUG--UACUAAUC--ACUGGUCUCAUUUGGGCACUAAUCUCAUA--UAAU-AACAC-AUU----
................((((((((-(((((....(((((((((.((--.......)--).))))).))))..))).)))..))))))--)...-.....-...---- ( -22.30)
>DroAna_CAF1 260 92 - 1
CAACUGCAAGGUAUCAGUAUGAGU-GGGCCGGUGAAUGGACUAAUG--UACUAAUC--ACUGGUCGCAUCUGGGCAUUAAUCUCGUA--UA-U-UAACU--CC----
................(((((((.-.(((((((((.(((((....)--).))).))--)))))))((......))......))))))--).-.-.....--..---- ( -25.80)
>consensus
CCAUUCCAAGGUAUCAGUAUGAGU_GGGCCAUUUAAUGGACUAAUG__UACUAAUC__ACUGGUCUCAUUCGGGCACUAAUCUCAUA__UA_U_AACCU_AUU____
.................((((((....(((.....((((((((.................))))).)))...)))......)))))).................... (-12.46 = -12.68 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:55 2006