Locus 2893

Sequence ID 2L_DroMel_CAF1
Location 8,312,996 – 8,313,093
Length 97
Max. P 0.585631
window4596

overview

Window 6

Location 8,312,996 – 8,313,093
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.16
Mean single sequence MFE -32.88
Consensus MFE -19.99
Energy contribution -19.77
Covariance contribution -0.22
Combinations/Pair 1.21
Mean z-score -1.77
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.585631
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8312996 97 + 22407834
ACGCAGAUCCUAAU---CAAGUAUACUAUUAUGCCCUGGGUCUAUUCGGCAGCACAUUGCUAUCGGCUGUGUGUGCCACCCACUUCGAUUGGCGCAUGGC
.(((.((((.....---...(((((....)))))..(((((......((((.(((((.((.....)).))))))))))))))....)))).)))...... ( -28.00)
>DroSim_CAF1 7219 97 + 1
ACACAGAUCCCAAU---CAAGUUUAUUAUUAUGCCUUGGGUCUAUUCGGCAGCACAUUGCUGUCGGCUGUGUGUGCCACACACUUCGACUGGCGCAUGGC
((((((..(((((.---...((.((....)).)).))))).....((((((((.....))))))))))))))((((((...........))))))..... ( -31.40)
>DroEre_CAF1 7346 97 + 1
ACGCAGACUCCAAU---GAAGUAUAUUAUUAUGCCUUGGGUCUAUUCGGCAGCACAUUGCUGUCGGCUUUGUGUGCCACCCACUUCGACUGGCGCAUGGC
..((((((.((((.---...(((((....))))).))))))))...(((((((.....))))))))).(..(((((((..(.....)..)))))))..). ( -35.90)
>DroYak_CAF1 7259 97 + 1
ACGCAGACCCCAAU---CAAGUAUAUUACUAUGCCUUGGGCCUAUUCGGCAGCACAUUGCUGUCGGCUGUGUGUGCCACCCACUUCGACUGGCGCAUGGC
((((((..(((((.---...(((((....))))).))))).....((((((((.....))))))))))))))((((((..(.....)..))))))..... ( -34.80)
>DroMoj_CAF1 18002 100 + 1
GAUCAGAGGCGGAUCAGAAAGCCUAUUACUAUGCCUUGGGCCUGUUCGGGAGCACUUUGUUGUCGGCGCUGUGCGGCUGUCACUUUGAUUGGCGCAUGGC
((((.......)))).....(((.((.((..(((((((((....)))))).)))....)).)).)))((((((((.(.(((.....))).).)))))))) ( -32.20)
>DroAna_CAF1 7527 97 + 1
ACCAGGAUCCGUAU---CUGGUGUAUUACUAUGCCCUGGGUCUCUUUGGCAGUACACUGCUCUCCGCCCUGUGCGCCACUCACUUUGAUUGGCGCAUGGC
((((((.......)---)))))..........(((..((((......(((((....)))))....)))).((((((((.((.....)).))))))))))) ( -35.00)
>consensus
ACGCAGAUCCCAAU___CAAGUAUAUUACUAUGCCUUGGGUCUAUUCGGCAGCACAUUGCUGUCGGCUGUGUGUGCCACCCACUUCGACUGGCGCAUGGC
................................(((.((.(((.....(((.(((((..((.....))..))))))))...(.....)...))).)).))) (-19.99 = -19.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:54 2006