| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,312,452 – 8,312,572 |
| Length | 120 |
| Max. P | 0.588604 |
| Location | 8,312,452 – 8,312,572 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.50 |
| Mean single sequence MFE | -42.72 |
| Consensus MFE | -19.40 |
| Energy contribution | -20.04 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8312452 120 - 22407834 UGGUAUUAAGGUGACUCCAAACAGAAGAUCGCAGACCAACGUGGCCAAGCUCCAGGGCCACCAGCUAAAGUGUCGACUUGUCCGCAGCCAGACUGCAUCCAAAACGACUACUGUGAGCCA .(((....((....))............((((((......((((((.........))))))..........((((..(((...((((.....))))...)))..))))..))))))))). ( -34.00) >DroVir_CAF1 6589 120 - 1 GGGCAGUAGCGUGGCGGCGUAGCACAGGUCGCACAGCAAUGUGGCCAGGCUCCAUGGCCACCACUCAAAGUGGCGACUGGUGCGCAGCCAAACGCCGUCCAGCACCACGACCAUCAGCCA .(((.(...(((((.(((...((((.((((((........((((((((....).)))))))(((.....))))))))).))))...)))....((......)).))))).....).))). ( -53.00) >DroPse_CAF1 6065 120 - 1 GGGCAGCAGCGUGGCCCCAUAGAGAAGAUCACAUAGUAGAGUGGCCAGGCUCCAGGGCCACCAGUCGAAAUGCCGACUGGUGCGCAGCCAGACGCCAUCCAAAACGACAAUCGUCAGCCA .(((.((.(((((((((....(((..(..(((........)))..)...)))..)))))((((((((......)))))))))))).))..((((...((......))....)))).))). ( -46.90) >DroGri_CAF1 7633 120 - 1 CGGCACCAAUGUGGCCCCAUAGCUCAAAUCACACAGCAAUGUGAUAAGGCUCCAGGGCCACCACUCAAACUGGAGGCUGGUGCGCAACCAAAUCCCGUCCAGCACCACAACUGUCAGCCA .(((......(((((((...((((...((((((......))))))..))))...))))))).........(((..(((((.(((...........)))))))).))).........))). ( -42.20) >DroAna_CAF1 6986 120 - 1 GGGCACCAAUGUCAGGGCGAAGAGCAGAUCGCAUAUCAUGGUUACCAGGCUCCAGGGCCACCAGUCAAAGUGCCGGCUCGUUCUCAGCCAGAUGCCGUCCAACACGACCACAGUGAGCCA .(((..........(((((..((.....))((((....(((((....((((....))))((.((((........)))).))....))))).)))))))))..(((.......))).))). ( -35.50) >DroPer_CAF1 6069 120 - 1 GGGCAGCAGCGUGGCCCCAUAGAGAAGAUCACAUAGUAGAGUUGCCAGGCUCCAGGGCCACCAGUCGAAAUGCCGACUGGUGCGCAGCCAGACGCCAUCCAAAACGACAAUCGUCAGCCA .(((.((.(((((((((....((.....))........(((((....)))))..)))))((((((((......)))))))))))).))..((((...((......))....)))).))). ( -44.70) >consensus GGGCAGCAACGUGGCCCCAUAGAGAAGAUCACAUAGCAAAGUGGCCAGGCUCCAGGGCCACCAGUCAAAGUGCCGACUGGUGCGCAGCCAGACGCCAUCCAAAACGACAACCGUCAGCCA .(((......((((..............)))).........((((..((((....))))(((((((........))))))).....))))..........................))). (-19.40 = -20.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:53 2006