Locus 2891

Sequence ID 2L_DroMel_CAF1
Location 8,309,109 – 8,309,217
Length 108
Max. P 0.866663
window4594

overview

Window 4

Location 8,309,109 – 8,309,217
Length 108
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.94
Mean single sequence MFE -40.42
Consensus MFE -32.88
Energy contribution -31.88
Covariance contribution -1.00
Combinations/Pair 1.38
Mean z-score -1.50
Structure conservation index 0.81
SVM decision value 0.85
SVM RNA-class probability 0.866663
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8309109 108 + 22407834
GCCGCUAGAGGAAUAUGCCAGGGCAGCACCUUCUGUAGCCACUGUAGGUGGGGCACCGCGGGUUUUCUGGAACUGGGAUGAUAUACUUAGUAAGUUCC--CAGUCAAGCA
((..((((((((...(((((((((.(((.....))).))).)))..((((...)))))))..)))))))).(((((((...(((.....)))...)))--))))...)). ( -36.00)
>DroVir_CAF1 3327 108 + 1
GCCGCUGGAGGAAUAUGCUCGAGCAGCGCCCGCUGUGGCCACGGUGGGCGGGGCGCCGCGCGUCUUCUGGAACUGGGACGACAUACUCAGUAAGCUGA--UCAGCAAGAG
...(((((.((((.((((.((.((..((((((((((....))))))))))..))..)).)))).))))...((((((........)))))).......--)))))..... ( -46.30)
>DroPse_CAF1 3237 110 + 1
GCCGCUAGAAGAAUAUGCACGGGCAGCGCCUGCUGUGGCCACAGUCGGUGGUGCACCGCGUGUCUUCUGGAAUUGGGAUGAAAUACUCAGUAAGUGAAAAGAGUGUAGCA
.((.((((((((.(((((..(((((.((((.(((((....))))).)))).))).)))))))))))))))....))..((..((((((............))))))..)) ( -42.60)
>DroGri_CAF1 3985 105 + 1
ACCGCUGGAGGAAUAUGCACGAGCUGCGCCCGCUGUGGCAACGGUGGGUGGGGCACCGCGCGUCUUCUGGAACUGGGAUGAUAUACUCAGUGAGUCCA--UUCCCA---U
....(..(((((...(((.((.(((.((((((((((....)))))))))).)))..)).))))))))..)...(((((.(((.(((...))).)))..--.)))))---. ( -44.80)
>DroYak_CAF1 3461 108 + 1
GCCGCUGGAGGAAUAUGCCAGAGCAGCACCUGCAGUUGCCACUGUAGGUGGAGCACCUCGGGUCUUUUGGAACUGGGAUGAUAUACUUAGUAAGUUUC--CAAUCAAACA
...(((.((((....(((....))).((((((((((....)))))))))).....)))).)))...(((((((((((........)))))).....))--)))....... ( -34.80)
>DroPer_CAF1 3237 110 + 1
GCCGCUAGAAGAAUAUGCACGGGCAGCGCCUGCUGUGGCCACUGUCGGUGGUGCACCGCGUGUCUUCUGGAAUUGGGAUGAAAUACUCAGUAAGUGAAAAGAGUGUAGCA
.((.((((((((.(((((..(((((.((((.((.((....)).)).)))).))).)))))))))))))))....))..((..((((((............))))))..)) ( -38.00)
>consensus
GCCGCUAGAGGAAUAUGCACGAGCAGCGCCUGCUGUGGCCACUGUAGGUGGGGCACCGCGCGUCUUCUGGAACUGGGAUGAUAUACUCAGUAAGUUAA__CAGUCAAGCA
....((((((((...(((....((..((((((((((....))))))))))..))...)))..)))))))).((((((........))))))................... (-32.88 = -31.88 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:52 2006