Locus 289

Sequence ID 2L_DroMel_CAF1
Location 820,608 – 820,728
Length 120
Max. P 0.725677
window460

overview

Window 0

Location 820,608 – 820,728
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.72
Mean single sequence MFE -45.13
Consensus MFE -30.85
Energy contribution -30.92
Covariance contribution 0.06
Combinations/Pair 1.41
Mean z-score -2.20
Structure conservation index 0.68
SVM decision value 0.41
SVM RNA-class probability 0.725677
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 820608 120 - 22407834
AUAUUGUUGCGAUGCUCCAGGCUGCCCACAUACUGCUUGCACGAGUUGGCCUUGUGGCCCAGCUCGCCGCAAUAGUGGCACGUGGGCAGUUUCUUGUGCAGCUGAUCCUUACCCAGUUCC
.....((((((.......(((((((((((.(((((.((((.((((((((((....)).))))))))..)))))))))....)))))))))))....)))))).................. ( -49.30)
>DroGri_CAF1 6791 120 - 1
AUAUUAUUGCGAUGCUCCAUGCUGCCCACGUAUUGUUUGCACGAGUUCGCCUUGUGUCCCAAUUCGCCACAGUAAUGGCAGGUGGGCAGUUUCUUGUGCAACUGAUCCUUGCUGAGAUCA
......(((((.........((((((((((.((((...(((((((.....)))))))..)))).)((((......))))..)))))))))......)))))..(((((.....).)))). ( -40.16)
>DroWil_CAF1 8615 120 - 1
AUGUUGUUACGGUUCUCCAGGCUGCCAGCAUAUUGCUUGCACGCAUUCGCCUUGUGCCCCAGUUCGCCGCAAUAGUGACAGGUGGGCAGCUUUUUGUGAAGUUGAUCUUUGCUUAGGUCA
......((((((....))((((((((.(((((..((.((....))...))..))))).......((((.((....))...))))))))))))...))))...((((((......)))))) ( -34.30)
>DroMoj_CAF1 6598 120 - 1
AUGUUAUUGCGAUGCUCCAGGCUGCCCACAUACUGUUUGCACGAGUUCGCUUUGUGGCCGAGCUCGCCGCAGUAGUGGCACGUGGGUAGUUUUUUGUGCGUCUGAUCCUUGCUGAGAUCG
..........(((((.(.(((((((((((.............(((((((((....)).)))))))(((((....)))))..)))))))))))...).))))).(((((.....).)))). ( -47.80)
>DroAna_CAF1 7013 120 - 1
AUGUUGUUGCGGUGCUCCAGACUGCCCACGUACUGCUUGCACGAGUUGGCCUUGUGCCCGAGCUCGCCGCAGUAGUGGCACGUGGGCAGCUUCUUGUGCAUCUGAUCUUUGCUGAUCUCG
..........(((((.(.(((((((((((((...(((((((((((.....)))))))..))))..(((((....)))))))))))))))..))).).))))).((((......))))... ( -54.10)
>DroPer_CAF1 6885 120 - 1
AUGUUGUUGCGGUUCUCCAAGCUACCCGCGUAUUGCUUGCACGAAUUGGCCUUAUGGCCGAGCUCGCCGCAGUAGUGGCAUGUAGGUAGCUUCUUGUGUAGCUGAUCCUUGCUGAGGUCA
.....(((((((....))((((((((..(((.(..(((((.(((.((((((....))))))..)))..)))..))..).)))..)))))))).....))))).((.((((...)))))). ( -45.10)
>consensus
AUGUUGUUGCGAUGCUCCAGGCUGCCCACAUACUGCUUGCACGAGUUCGCCUUGUGGCCCAGCUCGCCGCAGUAGUGGCACGUGGGCAGCUUCUUGUGCAGCUGAUCCUUGCUGAGAUCA
..........(.(((.(.(((((((((((.....(((..((((((.....))))))....)))..(((((....)))))..)))))))))))...).))).).((((........)))). (-30.85 = -30.92 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:09 2006