| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,277,666 – 8,277,756 |
| Length | 90 |
| Max. P | 0.992498 |
| Location | 8,277,666 – 8,277,756 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 95.45 |
| Mean single sequence MFE | -30.96 |
| Consensus MFE | -30.04 |
| Energy contribution | -29.72 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.992498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8277666 90 - 22407834 UGCGCUCA------CUUCUUGAGCUGCUGAGAAGCGCUCGACGCCUGCGCGAUCCAAAUCCGAUUGAGUUUCUUUUGAACCGUCGUCGAGUGCACA .(((((((------.....))))).))......((((((((((.(.((.(((((.......))))).))(((....)))..).))))))))))... ( -30.90) >DroSec_CAF1 55638 90 - 1 UGCGCUCA------CUUCUUGAGCUGCUGAGAAGCGCUCGACGCCUGCGCGAUCCGAAUUCGAUUGAGUUUCUUUUGAACCGUCGUCGAGUGCACA .(((((((------.....))))).))......((((((((((.(.(..(((...((((((....))))))...)))..).).))))))))))... ( -32.30) >DroSim_CAF1 56596 90 - 1 UGCGCUCA------CUUCUUGAGCUGCUGAGAAGCGCUCGACGCCUGCGCGAUCCGAAUCCGAUUGAGUUUCUUUUGAACCGUCGUCGAGUGCACA .(((((((------.....))))).))......((((((((((.(.((.(((((.......))))).))(((....)))..).))))))))))... ( -30.90) >DroEre_CAF1 58190 96 - 1 UGCGCUCACCAUUUCUUCUUGAGCUGCUGAGAAGCGCUCGACGCCUGCGCGAUCCAAAUCCGAUCGAGUUUCUUUUGAACCGUCGUCGAGUGCACA .(((((((...........))))).))......((((((((((.(.((.(((((.......))))).))(((....)))..).))))))))))... ( -32.00) >DroYak_CAF1 59774 90 - 1 UGCGCUUA------CUUCUUGAGCUGCUGAGAAGCGCUCGACGCCUGCGCGAUCCGAAUCCGAUUGAGUUUCUUUUGAACCGUCGUCGAGUGCACA .(((((((------.....))))).))......((((((((((.(.((.(((((.......))))).))(((....)))..).))))))))))... ( -28.70) >consensus UGCGCUCA______CUUCUUGAGCUGCUGAGAAGCGCUCGACGCCUGCGCGAUCCGAAUCCGAUUGAGUUUCUUUUGAACCGUCGUCGAGUGCACA .(((((((...........))))).))......((((((((((.(.((.(((((.......))))).))(((....)))..).))))))))))... (-30.04 = -29.72 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:42 2006