Locus 2884

Sequence ID 2L_DroMel_CAF1
Location 8,273,119 – 8,273,210
Length 91
Max. P 0.810484
window4582

overview

Window 2

Location 8,273,119 – 8,273,210
Length 91
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 88.78
Mean single sequence MFE -26.56
Consensus MFE -21.98
Energy contribution -21.98
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -1.63
Structure conservation index 0.83
SVM decision value 0.65
SVM RNA-class probability 0.810484
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8273119 91 + 22407834
CGUGGGCAGAGGAGACCUAGGAGCAGUUCAUUGAGCUCCACUGUAACGCAUACACUCGCUUCGGUGUCUCUUCUUUAUACUAUUAUUUUUU---
.(((...(((((((((...(((((..........)))))((((.((.((........)))))))))))))))))...)))...........--- ( -26.30)
>DroSec_CAF1 51089 94 + 1
CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGGUUGUCUCUUCUUUAUACUAUUAUUUUUUGUU
.(((...((((((((((((((((.(((....((.((...........)).)).))))))))))..)))))))))...))).............. ( -25.60)
>DroSim_CAF1 51979 94 + 1
CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGGGUGUCUCUUCUUUAUACGAUUAUUUUUUGUU
((((...((((((((((((((((.(((....((.((...........)).)).)))))))))))..))))))))...))))............. ( -28.20)
>DroEre_CAF1 53499 86 + 1
CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCCUGGGUGUCUCUUCUUUUCAUUAUUUU--------
.(((((.((((((((((((((((.(((....((.((...........)).)).)))))))))))..)))))))).)))))......-------- ( -30.20)
>DroYak_CAF1 54964 93 + 1
CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGCCUGCCUCUUCUUUUCAUCAUUUUUGU-UGUU
.(((((.(((((((...((((((.(((((...))))).)........((........))..))))).))))))).))))).........-.... ( -22.50)
>consensus
CGUGGGCAGAGGAGACCUAGGCGCAGUUCAUUGAGCUCCACUGUAACGCACACACUCGCUUGGGUGUCUCUUCUUUAUACUAUUAUUUUUUGUU
.(((...((((((((((((((((.(((....((.((...........)).)).))))))))))..)))))))))...))).............. (-21.98 = -21.98 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006