| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,270,201 – 8,270,292 |
| Length | 91 |
| Max. P | 0.624105 |
| Location | 8,270,201 – 8,270,292 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Mean single sequence MFE | -19.95 |
| Consensus MFE | -12.64 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8270201 91 + 22407834 -UGCUU-UUGGCUCAAAUUGCAAAUGCAAAUUGCAAAUUUUUGUGGUCAUUGUUAAGUAAAGUAAAGGCCAUAAAUAGACACAGA----------C-----ACAAACA- -((..(-(((..((...((((((.......))))))...(((((((((.(((((......))))).)))))))))..))..))))----------.-----.))....- ( -17.20) >DroPse_CAF1 60022 99 + 1 CUCCUCUUGGGCUCAAAUUGCAAAUGCAAAUUGCAAAUUUUUGUGGUCAUUGUUAAGU-----AAAGGCCAUAAAUAGGCACACGGCUA---CAACAGC-AACACAAA- ...((.(((((((....((((....))))..(((.....(((((((((.(((.....)-----)).)))))))))...)))...)))).---))).)).-........- ( -20.60) >DroWil_CAF1 59464 91 + 1 -------ACGGCUCAAAUUGCAAAUGCAAAUUGCAAAUUUUUGUGGUCAUUGUUAACU-----AAAGGCCAUAAAUAGACACACGGCUG----GCCAGC-AACAACAA- -------.((((((((.((((....)))).)))......(((((((((.(((.....)-----)).))))))))).........)))))----......-........- ( -19.90) >DroMoj_CAF1 60783 98 + 1 -ACCGU-UUGGCUCAAAUUGCGAAUGCAAAUUGCGAAUUUUUGUGGUCAUUGUUAAGU-----AAAGGCCAUAAAUAGGCUCACAGCAAAGGCAA----GAACAACAAC -...((-((.(((....((((....)))).((((.....(((((((((.(((.....)-----)).)))))))))..(.....).)))).)))..----))))...... ( -19.70) >DroAna_CAF1 56846 85 + 1 -UGCGC-UUGGCUCAAAUUGCAAAUGCAAAUUGCAAAUUUUUGUGGUCAUUGUUAAGU-----AAAGGCCAUAAAUAGGCACACC----------------GAACACA- -((.((-(((...(((.((((....)))).)))......(((((((((.(((.....)-----)).)))))))))))))).))..----------------.......- ( -19.50) >DroPer_CAF1 61580 98 + 1 CUCCUCUUGGGUUCAAAUUGUA-AUGCAGAUUGCAAUUUUUUGUGGUCAUUGUUAAGU-----AAAGGCCAUAAAUAGGCACACGGCUA---CAACAGC-AACACAAA- .(((....)))......((((.-.(((.(((..(((....)))..)))..((((.(((-----....(((.......))).....))).---.))))))-)..)))).- ( -22.80) >consensus _UCCUC_UUGGCUCAAAUUGCAAAUGCAAAUUGCAAAUUUUUGUGGUCAUUGUUAAGU_____AAAGGCCAUAAAUAGGCACACGGCUA____AAC____AACAAAAA_ .........(..((...((((((.......))))))...(((((((((..................)))))))))..))..)........................... (-12.64 = -12.17 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:37 2006