Locus 2880

Sequence ID 2L_DroMel_CAF1
Location 8,265,691 – 8,265,781
Length 90
Max. P 0.613126
window4573

overview

Window 3

Location 8,265,691 – 8,265,781
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -19.94
Consensus MFE -13.88
Energy contribution -14.77
Covariance contribution 0.89
Combinations/Pair 1.12
Mean z-score -1.36
Structure conservation index 0.70
SVM decision value 0.16
SVM RNA-class probability 0.613126
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8265691 90 - 22407834
ACAUCACAAAUGACAACAAAUGGAAAAAUAGUUACAGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGUGUGAAAGCA-
...(((((..(((.((((.........((((.......))--))......)))).))).((((((.(......).)))))).))))).....- ( -18.76)
>DroSec_CAF1 43754 90 - 1
ACAUAACAAAUGACAACGAAUGGAAAAAUAGUUACGGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGUGUGAAAGCA-
.((((.....((((................)))).....)--))).....((((((((.((((((.(......).))))))...))))))))- ( -19.59)
>DroSim_CAF1 43793 87 - 1
ACAUAACAAAUGACAACGAAUGGAAAAAUAGUUACG-CCU--AUGGAAAAUGUUUUCA-GAUGGCGACGCCUUUGG-CAUCGUGUGAAAGCA-
...............((((...............((-((.--.(((((.....)))))-...))))..(((...))-).))))((....)).- ( -17.90)
>DroEre_CAF1 45968 90 - 1
ACAUAACUCAUGACAGAACACGGAAAAUUAGUUACGGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGCGUGAAAGCA-
.((((..((.((((................)))).))..)--))).....((((((((.((((((.(......).))))))...))))))))- ( -21.59)
>DroYak_CAF1 47335 90 - 1
ACAUAACUAAUGAUAGAAAAUGGAAAAAUAUUUACGGCCU--AUGGAAAAUGUUUUCAAGAUGGCGACGCCUAUGGCCAUCGUGUGAAAGCA-
.((((.(((....))).(((((......)))))......)--))).....((((((((.((((((.(......).))))))...))))))))- ( -19.80)
>DroPer_CAF1 53777 91 - 1
UUUUGUUUAAUUUAAGAAAACAACAAAAUAUUUGUUUUCUUCAUGGAAAACGCUUUCAAGAUGGCGUCGU--UUGCGAAAAGCGUGAAAGCCU
....((((..(..((((((((((........))))))))))...)..))))(((((((.....((.(((.--...)))...)).))))))).. ( -22.00)
>consensus
ACAUAACAAAUGACAAAAAAUGGAAAAAUAGUUACGGCCU__AUGGAAAAUGUUUUCAAGAUGGCGACGCCUUUGGCCAUCGUGUGAAAGCA_
.....................................((.....)).....(((((((.((((((.(......).))))))...))))))).. (-13.88 = -14.77 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:33 2006