Locus 2879

Sequence ID 2L_DroMel_CAF1
Location 8,262,271 – 8,262,384
Length 113
Max. P 0.832074
window4572

overview

Window 2

Location 8,262,271 – 8,262,384
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.38
Mean single sequence MFE -27.79
Consensus MFE -19.00
Energy contribution -19.00
Covariance contribution 0.00
Combinations/Pair 1.31
Mean z-score -1.69
Structure conservation index 0.68
SVM decision value 0.72
SVM RNA-class probability 0.832074
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8262271 113 - 22407834
CAAGCAGUCCCCAACUCUAUUGAACGGCAACGGAACUCUAUUGGAUGCCAAUAUGCCUGGCGGUAUACCCACUCCCGGAACACCAAAUUCCAAAGCCAAGGUAG-------CAAAAAAAA
...((....................((((.(.((......)).).))))....((((((((((....)).......((((.......))))...))).))))))-------)........ ( -24.80)
>DroVir_CAF1 50518 108 - 1
CAAGCAGUCACCCACUUUACUUAACGGCAACGGCGCUUUGUUAGAUGCCAACAUGCCCGGCGGAAUACCAACGCCCGGCACGCCCAACUCCAAAGCCAAGGUGA---------GUU---U
.......(((((..((((.......(((...((((((.....)).))))....((((.((((.........)))).)))).))).......))))....)))))---------...---. ( -31.84)
>DroGri_CAF1 53939 108 - 1
CAAGCAGUCACCCACAUUACUUAACGGCAACGGCGUUUUAUUGGAUGCCAACAUGCCCGGCGGAAUACCAACGCCCGGCACGCCCAACUCCAAAGCCAAGGUAA---------GCU---A
..(((.((.....)).((((((...(((...(((((((....)))))))....((((.((((.........)))).))))..............))).))))))---------)))---. ( -32.50)
>DroWil_CAF1 46864 108 - 1
CAAACAAUCUCCCACUUUACUCAACGGCAACGGAAAUCUAUUGGAUGCCAAUAUGCCUGGUGGAAUUCCCACACCUGGUACCCCCAAUUCCAAAGCCAAGGUAA---------AUU---A
...............((((((....(((...((((...((((((...))))))((((.((((.........)))).)))).......))))...)))..)))))---------)..---. ( -24.70)
>DroMoj_CAF1 50083 108 - 1
UAAGCAGUCACCCACUUUACUUAACGGCAACGGAGCUUUAUUGGAUGCCAAUAUGCCUGGCGGAAUUCCAACGCCUGGCACGCCCAAUUCCAAAGCCAAGGUAA---------GCU---A
..((((((.....)))((((((..((....))(.((((((((((..((.....((((.((((.........)))).)))).)))))))...)))))).))))))---------)))---. ( -30.10)
>DroAna_CAF1 48840 116 - 1
CAAGCAAUCCCCGACUUUAUUGAACGGCAACGGAAAUCUAUUGGAUGCCAAUAUGCCUGGCGGUAUACCCACCCCUGGAACUCCAAAUUCCAAAUCAAAGGUGAGAGUUAUUAAAA----
............((((((.......((((.(.((......)).).)))).....((((((.(((......)))))(((((.......)))))......)))).)))))).......---- ( -22.80)
>consensus
CAAGCAGUCACCCACUUUACUUAACGGCAACGGAACUCUAUUGGAUGCCAAUAUGCCUGGCGGAAUACCAACGCCCGGCACGCCCAAUUCCAAAGCCAAGGUAA_________AAU___A
................(((((....(((...((((...((((((...))))))((((.((((.........)))).)))).......))))...)))..)))))................ (-19.00 = -19.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:32 2006