| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,250,570 – 8,250,685 |
| Length | 115 |
| Max. P | 0.695039 |
| Location | 8,250,570 – 8,250,685 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.44 |
| Mean single sequence MFE | -39.82 |
| Consensus MFE | -28.64 |
| Energy contribution | -27.45 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8250570 115 + 22407834 C--UGUUUACAAACCUGGAGUGUAAUCUGGUCGCUGUUCAUGGUGCUUGAUGCCGAAACUGAACUCUGGCGUCUUGUUGAGCUUCACCUUCUCUGGACAAUAUGCGCCAGGAGCUGC .--...........(..((......))..)..((.((((.((((((..((((((((........)).))))))(((((.((...........)).)))))...)))))).)))).)) ( -32.30) >DroVir_CAF1 31467 117 + 1 GUGUAACAACAAACCUGGCGUAUAGUCAGGCCGCAGCUCAUGAUGUUUGAUGCCGAAACUAAACUCCGGCGUCUUGCUGGGGUUGACCUUCUCGGGAGAAUAGGCGCCAGGAGCUGU .............((((((.....))))))..(((((((.((.((((((.(.((((.....(((((((((.....))))))))).......)))).)...)))))).)).))))))) ( -43.80) >DroWil_CAF1 31675 115 + 1 A--GAUUUACAAACCUGGUGUAUAGUCUGGCCUAAGUUCGUGAUGCUUGAUGCCGAAACUGAACUCUGGUGUCUUGUUCAGCUUCACUUUCUCAGGGCAAUAGGCACCAGGAGCUGC .--..........((((((((.((...((.(((.((...((((.(((.((((((((........)).))))))......))).))))...)).))).)).)).))))))))...... ( -36.10) >DroMoj_CAF1 34440 115 + 1 U--UAUCUACAAACCUGGCGUGUAGUCAGGUCGCAGCUCGUGAUGUUUGAUGCCAAAACUGAACUCUGGUGUCUUGCUGAGUUUCACCUUCUCGGGAGAAUAGGCGCCAGGAGCUGU .--.........(((((((.....))))))).(((((((((...((((.......))))...)).((((((((((.(((((.........))))).)....)))))))))))))))) ( -42.40) >DroAna_CAF1 36061 115 + 1 A--UGUAUACAAACCUGGUGUAUAAUCUGGCCGCAGCUCAUGGUGUUUGAUGCCAAAACUGAACUGAGGCGUCUUAUUGAGCUUCACCUUCUCAGGACAGUAGGCGCCAGGAGCUGU .--(((((((.......)))))))........(((((((.(((((((((.((((......(((.((((((.((.....))))))))..)))...)).)).))))))))).))))))) ( -38.70) >DroPer_CAF1 37326 115 + 1 A--UGGGGACAAACCUGGCGUGUAGUCGGGCUUCUGUUCGUGGUGCUUGAUGCCGAAACUAAACUCUGGCGUCUUGUGGGGAUUCACCUUUUCGGGGCAAUAGGCGCCAGGAGCUGU .--((....))..((((((.....)))))).....((((.(((((((((..(((((........)).)))((((((.(((......)))...))))))..))))))))).))))... ( -45.60) >consensus A__UAUCUACAAACCUGGCGUAUAGUCUGGCCGCAGCUCAUGAUGCUUGAUGCCGAAACUGAACUCUGGCGUCUUGUUGAGCUUCACCUUCUCGGGACAAUAGGCGCCAGGAGCUGU .............((((((((.((...........(((((....((..(((((((...........)))))))..)))))))....((......))....)).))))))))...... (-28.64 = -27.45 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:25 2006