Locus 2874

Sequence ID 2L_DroMel_CAF1
Location 8,248,791 – 8,248,911
Length 120
Max. P 0.977713
window4564

overview

Window 4

Location 8,248,791 – 8,248,911
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.61
Mean single sequence MFE -43.55
Consensus MFE -27.78
Energy contribution -26.73
Covariance contribution -1.05
Combinations/Pair 1.56
Mean z-score -2.28
Structure conservation index 0.64
SVM decision value 1.80
SVM RNA-class probability 0.977713
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8248791 120 + 22407834
UGCUGGGUUAUGAUCUUGACGUACCUUCUCGGGAGAGUAGGCUCCUGGAGCAGGAGUAUCACUUGGCUUUUGAAGGUCGUGACGACCGGCAAAGGAGUACGCUGGAUUGUGGUCCAACCU
...(((..((..((((.(.(((((((.(((....))).))(((((((...))))))).........((((((..(((((...)))))..)))))).)))))).))))..))..))).... ( -47.20)
>DroGri_CAF1 34380 120 + 1
UGCUGGAUUGUGAUCUUGGCGAACCUUCUCAGGAGAGUAUGCUCCAGGAGCAGGUGUUUCACUUGGCUUUUGGAGGUCAUGACGACCAGCGAAAGAAAAUGCUGGAUUAUGAUCUAGUCG
.(((((((..((((((.((((.(((((.....))).)).(((((((((((((((((...))))).)))))))))((((.....)))).)))........))))))))))..))))))).. ( -45.50)
>DroWil_CAF1 29546 120 + 1
GGCAGGAUUGUGAUCUUGUCUAACCUUUUCGGGAGAGUAAGCACCUGGAGCGGGGAUGUCAUUAGCUUUGUGAAGGUCGUGACGACCAGCAAACGAAAACGAGGGAGUGUGGUCAAGCCU
(((..(((..((.((((((....((.(((((((.(......).))))))).))((.((((((.(.(((....))).).)))))).))...........))))))...))..)))..))). ( -35.80)
>DroMoj_CAF1 32323 120 + 1
GGCAGGAUUGUGAUCCUGACGGACUUUUUCGGGAGAGUACGCUCCAGGAGCAGGAGUAUCGCUUGGUUUGUGAAGAUCAUGGCGGCCAGCGAAAGAAUAGGCGGGAUUAUGGUCUAGUCU
(((.((((..((((((((((...((.((((.((((......)))).)))).))..)).(((((.((((..((.....))..)..)))))))).........))))))))..)))).))). ( -43.90)
>DroAna_CAF1 34274 120 + 1
UGCGGGAUUGUGAUCUUGACGUACUUUCUCCGGGGAGUAGGCUCCUGGAGCUGGAGUAUUGUCAGGUUUGUGGAGGUCAUGUCGUCCAGCAAACGAAAAAGCGGGGUUGUGAUCUUGUCU
.(((((((((..((((((((((((((((((((((.((....)))))))))..)))))).))))..(((((((((.(......).)))).)))))........)))))..))))))))).. ( -47.10)
>DroPer_CAF1 35833 120 + 1
AGCGGGGUUAUGAUCUUGUCGGUUCUUUUCGGGAGAAUAAGCUCCAGGAGCGGGAGUAUCACUUGGCUUAUGGAGGUCGUGGCGACCAGCAAGGGAGAAGGAAGGAUUGUGAUCUUGUCU
.(((((((((..(((((..(..((((((((....)))...((((((.((((.(.((.....))).)))).))))(((((...))))).))..)))))..)..)))))..))))))))).. ( -41.80)
>consensus
UGCAGGAUUGUGAUCUUGACGAACCUUCUCGGGAGAGUAAGCUCCAGGAGCAGGAGUAUCACUUGGCUUGUGAAGGUCAUGACGACCAGCAAAAGAAAACGCGGGAUUGUGAUCUAGUCU
.(((((((((((((((((.....(((.(((.((((......))))..))).)))............(((.((..((((.....))))..)).)))......))))))))))))))))).. (-27.78 = -26.73 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:24 2006