| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,248,591 – 8,248,711 |
| Length | 120 |
| Max. P | 0.832035 |
| Location | 8,248,591 – 8,248,711 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.00 |
| Mean single sequence MFE | -41.98 |
| Consensus MFE | -26.80 |
| Energy contribution | -25.78 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8248591 120 + 22407834 AAAGCUGGAUUAUGAUCUUGCCUGACCUUUUCGGGAUGAUAAUCCCCAGGAGCGGGAGUAUUGUUCUCUACUUUCGGAUCGUUUUUGCCACCGAAAGUGUAGGCUGGAGUAUGAUUUAAG .....(((((((((.(((.(((((..(((((.(((((....))))).))))).(((((.....)))))(((((((((...((....))..)))))))))))))).))).))))))))).. ( -39.40) >DroGri_CAF1 34180 120 + 1 AAAGCGGGAUUGUGAUCCUGUCUGACCUUUUCGGGGUGAUAAUCACCGGGAGCAGGUGUAUUAUGCUCCACUUUCGGGUCAUUUCUACCACCAAAGGAAUAAGCGGGAGUGUGAUCUAAC ......((((..(..((((((..(((((......((((.....)))).((((((.........))))))......)))))((((((........))))))..))))))..)..))))... ( -38.70) >DroSec_CAF1 26583 120 + 1 AAAGCUGGGUUAUGAUCUUGCCUGACCUUUUCGGGAUGAUAAUCCCCUGGAGCGGGAGUAUUGUUCUCUACUUUCGGAUCGUUUUUGCCACCGAAAGUAUAGGCCGGAGUAUGGUCUAAA .....(((..((((.(((.(((((........((((..(((.(((((....).)))).)))..)))).(((((((((...((....))..)))))))))))))).))).))))..))).. ( -39.90) >DroEre_CAF1 28570 120 + 1 AAAGCUGGGUUAUGAUCUUGCCUGACUUUCUCGGGGUGAUAGUCUCCAGGAGCAGGAGUAUUGUUCUCCACUUUCGGAUCGCUUUUGCCACCGAAAGUGUAGGCCGGAGUAUGGUCUAAA .....(((..((((.(((.(((((((((..((((((..(.(((.(((..(((..((((.......)))).)))..)))..))).)..)).)))))))).))))).))).))))..))).. ( -44.40) >DroMoj_CAF1 32123 120 + 1 AAAGCGGGACUGUGGUCUAGUCUGACUUUUUCAGGGUGGUAAUCACCAGGGGCGGGGGUGUGGUUCUCGACCUUGGGAUCAUUCUUGCCACCAAAGGUAUAAGCGGGUGUGUGAUCCAAU ...((....(((.((((......))))....)))((((((((((.((((((.((((..(...)..)))).)))))))))......)))))))..........))((((.....))))... ( -40.20) >DroAna_CAF1 34074 120 + 1 AAAGCGGGAUUGUGAUCUUGCCUGACUUUUUCUGGGUGAUAGUCACCCGGAGCUGGAGUGUGGUUCUCCACUUUAGGAUCGCUCUUUCCUCCAAAGGUAUAGGCAGGAGUGUGAUCUAAU ......((((..(..(((((((((((((((...(((((.....)))))((((..((((.((((((((.......)))))))).)))).)))))))))).)))))))))..)..))))... ( -49.30) >consensus AAAGCGGGAUUAUGAUCUUGCCUGACCUUUUCGGGGUGAUAAUCACCAGGAGCGGGAGUAUUGUUCUCCACUUUCGGAUCGUUUUUGCCACCAAAAGUAUAGGCCGGAGUAUGAUCUAAA ......((((((((.(((.(((((((((((..(((((((.(((..((..(((..((((.......)))).)))..))...))).))))).)))))))).))))).))).))))))))... (-26.80 = -25.78 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006