| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,247,402 – 8,247,520 |
| Length | 118 |
| Max. P | 0.812577 |
| Location | 8,247,402 – 8,247,520 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.05 |
| Mean single sequence MFE | -46.90 |
| Consensus MFE | -27.82 |
| Energy contribution | -27.47 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.49 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8247402 118 + 22407834 GAACGCCGGAUUGAAGUCCUGCCUGACCUUCUCCGGGAAGUAGUCUCCGGGUGCGGGCGUUUCGCUGGGCUUAUGCAGGUCAUGGCGACCGGCGAAGGAGAAGGCGGGAUUGUGAUCU .......((((((.((((((((((..((((((((((((.....)).))))).((.((....(((((((((((....))))).)))))))).)))))))...)))))))))).)))))) ( -51.10) >DroPse_CAF1 32738 118 + 1 GUAGGAUGGAUUGUAAUCCUGCCGCACCUUCUCAGGAGAGUAUGCUCCAGGAGCGGGAGUAUCACUCGGUUUUUGCAGAUCGUGGCGACCAGCGAAGGAGAAGGAAGGAUUAUGAUCC .......((((..(((((((.((...(((((.(....(((((((((((.......))))))).))))((((.(..(.....)..).)))).).)))))....)).)))))))..)))) ( -47.90) >DroGri_CAF1 32991 118 + 1 AAAUGCUGGGUUGUGAUCCUGACGCACUUUCUCAGGCGAAUAGGCUCCAGGAGCUGGAGUUUCGCUUGGCCUGUGCAGAUCAUGACGACCGGCAAAUGAGAAGGCGGGAAUGUGAUCG ...((((((((..(((((.....((((....(((((((((...(((((((...))))))))))))))))...)))).)))))..))..)))))).....((..(((....)))..)). ( -45.20) >DroEre_CAF1 27381 118 + 1 GAACGCCGGGUUGAAGUCCUGCCUGACCUUCUCCGGGAAGUAGUCUCCGGGCGCCGGCGUUUCACUGGGCCUCUGCAGGUCAUGGCGACCGGCGAAGGAGAAGGCGGGAUUGUGAUCC .......((((((.((((((((((..((((((((((((.....)).))))).(((((((((......(((((....)))))..)))).))))))))))...)))))))))).)))))) ( -56.80) >DroWil_CAF1 28058 118 + 1 GAAGGCAGGAUUGUGAUCUUGUCUAACCUUUUCAGGAGAGUAAGCUCCUGGAGCGGGGGUGUCACUAGCUUUGUGAAGGUCGUGACGACCAGCAAACGAAAACGCGGGAGUGUGGUCC ..(((((((((....)))))))))..((.(((((((((......))))))))).)).((((((((.(.(((....))).).))))).))).......((..((((....))))..)). ( -44.50) >DroAna_CAF1 33083 118 + 1 GAAAGCUGGGUUGUGAUCUUGGCGAACCUUCUCCGGAGCGUAUGCCCCAGGAGCCGGGGUGUCAUUGGGUUUAUGCAGAUCGUGCCGUCCAGCGAAUGAGAAAGCGGGGUUGUGAUCC ....((((((..((((((((((((..((..((((((.((....)).)).))))..))..)))))....((....)))))))..))..)))))).............((((....)))) ( -35.90) >consensus GAACGCUGGAUUGUAAUCCUGCCGAACCUUCUCAGGAGAGUAGGCUCCAGGAGCGGGAGUUUCACUGGGCUUAUGCAGAUCAUGGCGACCAGCGAAGGAGAAGGCGGGAUUGUGAUCC .......((((..((((((((.....(((((((.((((......))))....((.((....(((...(((((....))))).)))...)).))....)))))))))))))))..)))) (-27.82 = -27.47 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:18 2006