Locus 2868

Sequence ID 2L_DroMel_CAF1
Location 8,237,204 – 8,237,298
Length 94
Max. P 0.808317
window4554

overview

Window 4

Location 8,237,204 – 8,237,298
Length 94
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 78.99
Mean single sequence MFE -17.11
Consensus MFE -10.94
Energy contribution -10.81
Covariance contribution -0.13
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.64
SVM decision value 0.64
SVM RNA-class probability 0.808317
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8237204 94 - 22407834
AGGGAAAUAAGA-AAAUAUAUGUAUAUAUAUAUAUAAAAGCAAUCUUAUUUCCGUCGGGAAUAAAAUGGCA-GAAGGCAGCCAGCCAGUCAAAACA
..((((((((((-...((((((((....)))))))).......))))))))))((...((......((((.-.......)))).....))...)). ( -21.70)
>DroSec_CAF1 15353 87 - 1
AGGGAAAUAAGU-AAAUAU--------AUAUAUAUAAGAGCCAUCUUAUUUCCGACGGGAAUAAAAUGAAAUGAAGGCAGCCAGCCAGUCAAAACA
..(((((((((.-......--------.................)))))))))..................(((.(((.....)))..)))..... ( -13.96)
>DroSim_CAF1 15472 87 - 1
AGGGAAAUAAGU-AAAUAU--------AUAUAUACAAGAGCAAUCUUAUUUCCGACGGGAAUAAAAUGAAAUGAAGGCAGCCAGCCAGUCAAAACA
..((((((((((-(.((..--------..)).)))..((....))))))))))..................(((.(((.....)))..)))..... ( -14.10)
>DroEre_CAF1 17045 87 - 1
AGGGAAAUAGGACAAAUUU----ACUCGUAUGUGUAACUGCAAUCUUGUUUCCUCCGGGAAUAAAACAAAAUGAAGGCAGUCAGGC-----ACACA
.(((((((.......))))----.)))...(((((.(((((..((((((((((....)))....)))))...))..)))))...))-----))).. ( -18.70)
>consensus
AGGGAAAUAAGA_AAAUAU________AUAUAUAUAAGAGCAAUCUUAUUUCCGACGGGAAUAAAAUGAAAUGAAGGCAGCCAGCCAGUCAAAACA
..(((((((((.................................)))))))))......................(((.....))).......... (-10.94 = -10.81 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:13 2006