Locus 2867

Sequence ID 2L_DroMel_CAF1
Location 8,224,350 – 8,224,470
Length 120
Max. P 0.818718
window4553

overview

Window 3

Location 8,224,350 – 8,224,470
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.83
Mean single sequence MFE -47.62
Consensus MFE -27.67
Energy contribution -27.62
Covariance contribution -0.05
Combinations/Pair 1.38
Mean z-score -1.72
Structure conservation index 0.58
SVM decision value 0.67
SVM RNA-class probability 0.818718
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8224350 120 - 22407834
CGGUCUGUGCGUCUUCCUCGCCGUGCGCUACCAGAAGGAGCACAAGCGGCAUCUGGCCCUUAAGGCAGCCGGAUUGGCCAACUUCGAGGAGGGCGCCGUGGGACACAUCAAUCCCGAUCU
.((((.(.(((((((((((((..((.(((.((....))))).)).))((((((((((((....))..)))))))..)))......))))))))))))..((((........)))))))). ( -54.70)
>DroVir_CAF1 2937 120 - 1
UGCACUCUGCGCCUUCCUGGCCGUACGCUAUCGGGAGGAGCGCAAAAAUCAUUUGGCCUUAAAGUCCGCGGGACUGGCCAACUUUGAAGAGGGCGAUGUGGCGCAAAUAAAUCCGGCGCU
.((.((((((((((((((((..(....)..)))))))).)))).....(((.((((((....(((((...)))))))))))...))))))).)).....(((((...........))))) ( -46.50)
>DroPse_CAF1 6005 120 - 1
AAGCCUUUGCGCCUUUCUGGCGGUGCGCUACCACAAGGAGCGCAAGCGUCAUUUGGCUUUGAAGGCCGCCGGUUUGGCCAACUUCGAGGAGGGCGCCGUGGAACAUAUCAAUCCUUCUUU
...((...(((((((((((((((((((((.((....)))))))((((........)))).....))))))((.....)).......))))))))))...))................... ( -47.00)
>DroGri_CAF1 4141 120 - 1
UGCGUUGUGCGCCUUCCUUGCCGUACGCUAUCGCCAGGAGCGUAAACAUAAUCUGGCCCUGAAGGCAGCCGGCUUGGCCAACUUUAUGGAUGGCGAUGUGGAGCAAAUUAAUCCGGCCAU
.((.....))((((((...((((((((((.((....)))))))).........))))...)))))).(((((.(((((((.((....)).))))..((.....))...))).)))))... ( -38.10)
>DroMoj_CAF1 2807 120 - 1
UGCCCUCUGCAUUUUCCUGGGCAUACGCUAUCGACAGGAGCGUCGGCGUCAUUUGGCCUUGAAGGCCGCUGGUUUGGCCAACUUUGUUGAGGGCGAUGUGGAGCAGAUCAAUCCGGCUCU
.((((((.(((..(((..((.((.((((...((((......))))))))....)).))..)))(((((......))))).....))).)))))).....(((((.((....))..))))) ( -43.40)
>DroAna_CAF1 10118 120 - 1
CAGCCUAUGCGCCUUCCUUGCCGUUCGCUACCACAAGGAGCACAAGCGGCACCUGGCCCUGAAGGCCGCCGGCCUGGCCAACUUUGAGGAGGGCGCCGUGGCACACAUCAAUCCAGAUCU
..(((...(((((((((((((((((.(((.((....)))))...))))))...(((((....(((((...)))))))))).....)))))))))))...))).................. ( -56.00)
>consensus
UGCCCUCUGCGCCUUCCUGGCCGUACGCUACCACAAGGAGCGCAAGCGUCAUCUGGCCCUGAAGGCCGCCGGAUUGGCCAACUUUGAGGAGGGCGACGUGGAACAAAUCAAUCCGGCUCU
....(..(((((((((((.....((((((.((....)))))))).........(((((....((((.....)))))))))......))))))))).))..)................... (-27.67 = -27.62 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:12 2006