Locus 2866

Sequence ID 2L_DroMel_CAF1
Location 8,219,093 – 8,219,200
Length 107
Max. P 0.784625
window4552

overview

Window 2

Location 8,219,093 – 8,219,200
Length 107
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 76.62
Mean single sequence MFE -30.17
Consensus MFE -22.01
Energy contribution -21.60
Covariance contribution -0.41
Combinations/Pair 1.39
Mean z-score -1.17
Structure conservation index 0.73
SVM decision value 0.57
SVM RNA-class probability 0.784625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8219093 107 + 22407834
UGUGAUCAUCCCUCAAU-C-UUACCGCAUGAACAUCCUUGUUUUUGGAGCGAGCCUUCUCCAGGUUUCGAUUGGCCGCUUCAUAAGCAGCCAAACACCGCAGUCGCCGG
.(((((...........-.-...(((...(((((....))))).))).((((((((.....)))))..(.(((((.(((.....))).))))).)..))).)))))... ( -26.60)
>DroVir_CAF1 7594 95 + 1
-------------UAAUCA-UUACCGCAUGAACAUCCUUGUUCUUGGAACGCGCCUUCUCCAAAUUUCGAUUGGCUGUCUCGUAGGCAGCCAAACAACGUAGGCGUCGU
-------------......-...(((...(((((....))))).))).((((((((.(((........))(((((((((.....))))))))).....).))))).))) ( -30.20)
>DroPse_CAF1 6610 98 + 1
---------CCAAAAAU-C-UUACCGCAUGAACGUCUUUGUUCUUGGAGCGAGCCUUUUCCAAAUUGCGAUUGGCCGUCUCGUAGGCGGCCAGGCAGCGCAGGCGUCGU
---------........-.-...(((...(((((....))))).))).((((((((..........(((.(((((((((.....)))))))))....))))))).)))) ( -34.00)
>DroMoj_CAF1 9490 96 + 1
-------------CAAAUAUUUACCGCAUGCACAUCCUUGUUCUUAGAGCGCGCCUUCUCCAAGUUGCGAUUGGCUGUCUCGUAGGCAGCCAAGCAGCGUAGGCGACGU
-------------...................................((((((((.......(((((...((((((((.....)))))))).)))))..))))).))) ( -31.10)
>DroAna_CAF1 8120 107 + 1
UUCAACCCUGACCCAAU-C-UUACCGCAUGGACGUCCUUAUUCUUUGAGCGAGCCUUCUCCAGAUUCCUGUUGGCCGUCUCGUAGGCAGCCAAACAUCGCAGGCGUCUG
.................-.-.........(((((((.(((.....)))((((........(((....)))(((((.(((.....))).)))))...)))).))))))). ( -25.10)
>DroPer_CAF1 6616 98 + 1
---------CCAAAAAU-C-UUACCGCAUGAACGUCUUUGUUCUUGGAGCGAGCCUUUUCCAAAUUGCGAUUGGCCGUCUCGUAGGCGGCCAGGCAGCGCAGGCGUCGU
---------........-.-...(((...(((((....))))).))).((((((((..........(((.(((((((((.....)))))))))....))))))).)))) ( -34.00)
>consensus
_________CC__CAAU_C_UUACCGCAUGAACAUCCUUGUUCUUGGAGCGAGCCUUCUCCAAAUUGCGAUUGGCCGUCUCGUAGGCAGCCAAACAGCGCAGGCGUCGU
........................(((..(((((....)))))((((((........)))))).......(((((((((.....))))))))).........))).... (-22.01 = -21.60 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:11 2006