| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,206,936 – 8,207,035 |
| Length | 99 |
| Max. P | 0.970678 |
| Location | 8,206,936 – 8,207,035 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.21 |
| Mean single sequence MFE | -39.63 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.35 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8206936 99 - 22407834 ----GCAGAAGUUGAGUUGGCAUCUGGACCUGGGGUUGAGUAGUGUCUGGAGUUGGUGGAGAUACUCUCAGCUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU ----.(((...(((((..(((.(((....(((((((((((.(((((((...........))))))))))))))))))))).)))))))).))).......... ( -35.90) >DroSec_CAF1 9853 99 - 1 ----GCAAAAGUUGAGGUGGCAUCUGCACCUGGGGUAGAGUAGUGUCUGGAGUUGGAGGAGAUACUCUCAGCUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU ----.........((((((((.(((((.(....))))))....(.(((((((((((((......))).)))))))))).).)))(((.....)))..))))). ( -38.20) >DroEre_CAF1 9823 99 - 1 ----GCAAAAGUUGAGGUAGCAUCUGCACCUGGGGUUGCGUAGUGUCUGGAGUUGGAGGUGAUACUCUCAACUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU ----..........((((.((....))))))((((((((.((((.(((((((((((((......))).))))))))))((.....))..)))).)))))))). ( -40.60) >DroYak_CAF1 9962 99 - 1 ----GCAAAAGUUGAGGUAGCAUCUGUACCUGUGGUUGAGCAGUAUCUGGAGUUGGGGGAGACACCCUCAACUCCGGAGAAGCCUUCAGGCUGAGUAGCCUUU ----..........(((((.(....))))))..(((((..(....((((((((((((((.....))))))))))))))..((((....)))))..)))))... ( -40.90) >DroAna_CAF1 8665 99 - 1 ----AAAGCAGCCGGGGUAGCAUCUCCAGCUUAGGUUGGCUGGUGUCCGGAGUGGGCGGGGAAACUCUGAGCUCUGGUGAAGCCUUGAGGGAUAGAAGUCUCU ----........((((((..((.(.((((((......)))))).).(((((((...((((....).))).)))))))))..))))))((((((....)))))) ( -38.10) >DroPer_CAF1 17776 103 - 1 GGAUGUAGCAGUCGCGGCAGCAUCUCCUGCCUGGGCUGUGAGGUGUCCGGCGUGGGUGGUGAGACCCUCAGCUCGGGGGAGGCCUUCAGGCUCAGCAAUCGCU .(((......)))((((..((..((((..(((((((((.(.(((.(((.((....)).).)).)))).)))))))))))))(((....)))...))..)))). ( -44.10) >consensus ____GCAAAAGUUGAGGUAGCAUCUGCACCUGGGGUUGAGUAGUGUCUGGAGUUGGAGGAGAUACUCUCAGCUCCGGAGAAGCCUUCAAGCUGAGUAGCCUCU .............(((((.((.((.((.....(((((........(((((((((((.((.....)).)))))))))))..)))))....)).)))).))))). (-24.23 = -24.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:10 2006