Locus 2864

Sequence ID 2L_DroMel_CAF1
Location 8,204,080 – 8,204,179
Length 99
Max. P 0.510442
window4550

overview

Window 0

Location 8,204,080 – 8,204,179
Length 99
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 86.23
Mean single sequence MFE -24.34
Consensus MFE -19.86
Energy contribution -20.38
Covariance contribution 0.52
Combinations/Pair 1.09
Mean z-score -1.44
Structure conservation index 0.82
SVM decision value -0.05
SVM RNA-class probability 0.510442
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8204080 99 + 22407834
AUUAAAAGUGGUACUUAAGUCCC-UACAACCACAAUGUCCAUGUCCAUGUGAAGUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUC--------------
.....((((((((((((((.((.-.....(((.(((.(((((....))).)).))).)))......)).))))......)))))).))))..........-------------- ( -21.00)
>DroSec_CAF1 6976 108 + 1
AUUAAAAGUGGGACUUUAGUCCC-UACAACUACAAU-----UCUCCAUGUGGAGUUAUGGGAUCCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUCAAAUCAA
.......(((((((((..(((((-.((..(((((..-----......))))).))...)))))..))))))))).(((((....)))))......................... ( -27.00)
>DroSim_CAF1 7438 108 + 1
AUUAAAAGUGGGACUUUAGUCCC-UACAACUACAAU-----UCUCCAUGUGGAGUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUCAAAUCAA
.......(((((((((...((((-.((..(((((..-----......))))).))...))))...))))))))).(((((....)))))......................... ( -25.60)
>DroEre_CAF1 7061 109 + 1
AUUAAAAGUGGGACUUUAGUCCCAUGCAUCAACAAU-----UCACCAUGUGGAGUUAUGGGAAUCAGGUCUUAUCAGCAGGUGCUUGCUUAUUAUUCAUCAAAUAUCAGAUCAA
.......(((((((....))))))).........((-----((.(((((......)))))))))..(((((....(((((....)))))((((........))))..))))).. ( -25.00)
>DroYak_CAF1 6971 108 + 1
AUUAAAAGUGGGACUUUAGUCCC-UUCAUCUAGAAU-----UCACCAUGUGGGCUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUUAAAUCAA
.......(((((((((...((((-(((.....))).-----...((....))......))))...))))))))).(((((....)))))......................... ( -23.10)
>consensus
AUUAAAAGUGGGACUUUAGUCCC_UACAACUACAAU_____UCUCCAUGUGGAGUUAUGGGAACCAGGUCUUAUCAGCAGGUGCCUGCUUAUUAUUCAUCAAAUAUCAAAUCAA
.......(((((((((...((((......(((((.............)))))......))))...))))))))).(((((....)))))......................... (-19.86 = -20.38 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006