Locus 2862

Sequence ID 2L_DroMel_CAF1
Location 8,196,760 – 8,196,850
Length 90
Max. P 0.539744
window4548

overview

Window 8

Location 8,196,760 – 8,196,850
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.92
Mean single sequence MFE -18.73
Consensus MFE -9.49
Energy contribution -9.64
Covariance contribution 0.14
Combinations/Pair 1.22
Mean z-score -1.94
Structure conservation index 0.51
SVM decision value 0.01
SVM RNA-class probability 0.539744
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8196760 90 - 22407834
CAAUUGCA-----AUAUAAUUUGCAAUUGCUGAAGAA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUGAAAACAUCGAAAAUAAUCCCAUAUUA
((((((((-----(......)))))))))........----........((((((........(....).......))))))................. ( -17.36)
>DroVir_CAF1 44331 92 - 1
UUAUUAAAGCCACAAAUCACGUGUAAUUG---AAGUCAACUACAAUGCGUAAUGUGCCGAAAUCGUGCGUAUUCAA--AUCAAA--UACAAUUAUUUCC
........(.((((...(.((((((.(((---....))).))).))).)...)))).)(((((.((..(((((...--....))--))).)).))))). ( -13.20)
>DroSec_CAF1 23458 90 - 1
CAAUUGCA-----AUAUAAUUUGCAAUUGUUGAAGAA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUUGAAGCAUAGAAAAUAAUCCCAGAUUA
((((((((-----(......)))))))))........----.(((((((((((........)))))..))))))......................... ( -19.90)
>DroSim_CAF1 23993 90 - 1
CAAUUGCA-----AUAUAAUUUGCAAUUGCUGAAGAA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAAUGAAGCAUCGAAAUUAAUCCCAGAUUA
((((((((-----(......)))))))))(((..((.----..(((...((((((..((....(....)...))..))))))..)))..)).))).... ( -19.70)
>DroEre_CAF1 23758 90 - 1
CAAUUGCA-----AUAUAAUUUGCAAUUGCUGAAGGA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUUGAAGCAUAGAAAAUAGUCGCAGAUAA
((((((((-----(......)))))))))(((.....----.(((((((((((........)))))..)))))).......((......)).))).... ( -21.10)
>DroYak_CAF1 23765 90 - 1
CAAUUGCA-----AUAUAAUUUGCAAUUGCUUUAGGA----ACAAUGCGCGAUGUGCCGAAAUCGUAAGCAUUAAAGCCUCGAAAAUGAUCACAGAUUA
((((((((-----(......))))))))).((.(((.----..((((((((((........)))))..)))))....))).))................ ( -21.10)
>consensus
CAAUUGCA_____AUAUAAUUUGCAAUUGCUGAAGAA____ACAAUGCGCGAUGUGCCGAAAUCGUAAGUAUUGAAGCAUCGAAAAUAAUCCCAGAUUA
((((((((.............))))))))..............((((((((((........)))))..))))).......................... ( -9.49 =  -9.64 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:07 2006