Locus 2859

Sequence ID 2L_DroMel_CAF1
Location 8,193,011 – 8,193,105
Length 94
Max. P 0.993311
window4545

overview

Window 5

Location 8,193,011 – 8,193,105
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 72.63
Mean single sequence MFE -22.39
Consensus MFE -13.80
Energy contribution -13.72
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -2.37
Structure conservation index 0.62
SVM decision value 2.39
SVM RNA-class probability 0.993311
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8193011 94 - 22407834
UCAUAUUUUUAAAGUUCUA--------CUUACACAUUAUUUUU----UAUUAGGUGGAACCUGUGCAAAUCUGGAGCUCUACAGAGCUCAUUAAAGUAUAUCAACA
.............((((((--------((((............----...)))))))))).(((((.......((((((....))))))......)))))...... ( -21.48)
>DroSec_CAF1 19680 98 - 1
GCUCAUUUUCAAAGUACUA--------AUUUCUUUUUUUUUUUAUUAAAUUAGGUGGAACCUGUGCAAAUCUGGAGCUCGACAGAGCUCAUUAAAGUAUAUCAACA
((.((.(((((.....(((--------((((...............))))))).)))))..)).)).......((((((....))))))................. ( -18.06)
>DroSim_CAF1 20219 94 - 1
GCUUAUUUUCAAAGUACUA--------AUUAAACCUUUUUUUU----AAUUAGGUGGAACCUGUCCAAAUCUGGAGCUCUACAGAGCUCAUUAAAGUAUAUCAACA
((((............(((--------((((((.......)))----)))))).((((.....))))......((((((....))))))....))))......... ( -19.90)
>DroEre_CAF1 20040 94 - 1
GCGUAUUUUGAAACA-------AGCAUAUCUAAACAUU-UUUU----GAACAGGUGGAACCUGUGCAAAUUUGGAGCUCCACCGAGCUCAUAAAAGUAUAUCAACA
..(((((((......-------............((..-.(((----(.(((((.....))))).))))..))((((((....))))))...)))))))....... ( -22.70)
>DroYak_CAF1 20103 102 - 1
GUAUUUUUUCAAACUACUAGACAGCAUAUUUAACAAUUUUUUU----GAACAGGUCGAACCUGUGCAAAUUUGGAGCUCCACCGAGCUCAUAAAAGUAUAUCAACA
((((((((.........................(((....(((----(.(((((.....))))).)))).)))((((((....))))))..))))))))....... ( -22.50)
>DroPer_CAF1 21106 94 - 1
UCAU--CCUACAGGUGAAA-----AAUCAUUAACUUUA-UUAU----UUCCAGGUGGAGCCGGUGCAGAUCUGGAGCUCUACGGAGCUCAUCAAAGUGUACCAGCA
((((--(.....)))))..-----..............-....----.(((....)))((.((((((......((((((....)))))).......)))))).)). ( -29.72)
>consensus
GCAUAUUUUCAAAGUACUA________AUUUAACAUUUUUUUU____AAUCAGGUGGAACCUGUGCAAAUCUGGAGCUCUACAGAGCUCAUUAAAGUAUAUCAACA
..................................................((((.....))))..........((((((....))))))................. (-13.80 = -13.72 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:04 2006