| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,181,374 – 8,181,468 |
| Length | 94 |
| Max. P | 0.638595 |
| Location | 8,181,374 – 8,181,468 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.16 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -17.51 |
| Energy contribution | -16.96 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8181374 94 + 22407834 C-GAAACUCUGUACAGAA-----AAAACCAUUUGUUCAAUGUGCGUGAUCUUUAAUCUUCAAUAAAACCGAUUGGGGUCCUGUGUAGCAGACCCCAAGAA .-(((..((((((((...-----..(((.....)))...)))))).))..)))..................((((((((.((.....))))))))))... ( -20.10) >DroVir_CAF1 24975 77 + 1 UG-AAACUUUGUAUAAAG----------AUUUUGUUUAAUGUGCGUG------------CAAUAAAACCUAUUGAGGUCGUGUGUAGCAGGCCUCAAGCA ..-.....((((((..(.----------(((......))).)..)))------------))).........((((((((.((.....))))))))))... ( -16.70) >DroSec_CAF1 8178 94 + 1 C-GAAACUCUGUACAGAA-----AAAACAAUUUGUUCAAUGUGCGUGAUCUUUAAUCUUCAAUAAAACCGAUUGGGGUCCUGUGUAGCAGACCCCAAGAA .-(((..((((((((...-----..(((.....)))...)))))).))..)))..................((((((((.((.....))))))))))... ( -21.10) >DroSim_CAF1 8669 94 + 1 C-GAAACUCUGUACAAAA-----AAAACCAUUUGUUCAAUGUGCGUGAUCUUUAAUCUUCAAUAAAACCGAUUGGGGUCCUGUGUAGCAGACCCCAAGAA (-(..((..((.(((((.-----.......))))).))..))...))........................((((((((.((.....))))))))))... ( -19.10) >DroEre_CAF1 8345 99 + 1 C-GAAACUCUGUACAAAAAACAAAAAACCAUUUGCUCCAUGUGCGUGAUCUUCAAUCUCUAAUAAAACCGAUUGGGGUCCUGUGUAGCAGACCCCAAGAA .-(((..((((((((.....((((......)))).....)))))).))..)))..................((((((((.((.....))))))))))... ( -23.60) >DroYak_CAF1 8345 92 + 1 C-GAAACUCUGUACAAA-------AAACCAUUUGUUCAAUGUGCGUGAUCUUCAAUCUUCAAUAAAACCGAUUGGGGUCCUGUGUAGCAGACCCCAAGAA .-(((..((((((((..-------.(((.....)))...)))))).))..)))..................((((((((.((.....))))))))))... ( -22.90) >consensus C_GAAACUCUGUACAAAA_____AAAACCAUUUGUUCAAUGUGCGUGAUCUUUAAUCUUCAAUAAAACCGAUUGGGGUCCUGUGUAGCAGACCCCAAGAA ..........(((((........................)))))...........................((((((((.((.....))))))))))... (-17.51 = -16.96 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:02 2006