Locus 2854

Sequence ID 2L_DroMel_CAF1
Location 8,175,186 – 8,175,283
Length 97
Max. P 0.769015
window4539

overview

Window 9

Location 8,175,186 – 8,175,283
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -39.90
Consensus MFE -25.58
Energy contribution -26.20
Covariance contribution 0.61
Combinations/Pair 1.30
Mean z-score -1.68
Structure conservation index 0.64
SVM decision value 0.52
SVM RNA-class probability 0.769015
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8175186 97 - 22407834
GGUGAGCAGCGAUAGCUGGCGGUUGACCUUGUUGCCGGUG---GUGUUGUUGAUGCUGCUGCUAUUGCAAUCUAGUUGCUGCCCAAGUGCGGUGGCGGGC
.((.(((((((...((((((..(.......)..)))))).---.))))))).))....(((((((((((.....((....)).....))))))))))).. ( -35.70)
>DroVir_CAF1 17451 94 - 1
CGUGAGCAACGAAAGCUGACGGUUGAUUUUGUUGCUGGUG---UUGUUGCUGCCGC---UGCUAUUGCACUCGAGCUGCUGCCCAAAGGCGGUGGCAGGC
....((((((((.(((.(((((......))))))))....---))))))))(((..---(((....))).....((..(((((....)))))..)).))) ( -37.00)
>DroPse_CAF1 2172 94 - 1
GGUGCGGAGCGUCAGCUGGCGGCUUGCUUUGUUGCCGGUG------UUGUUGAGGCUGCUGCUGUUGCAGUCAAGCUGCUGCCCAAAGGCGGUGGCAGGC
...((..(((.((((((((((((.......))))))))).------....))).)))(((((....)))))...((..(((((....)))))..))..)) ( -41.50)
>DroGri_CAF1 20174 97 - 1
CGUGAGCAGCGAUAGCUGUCGGUUGAUUUUGUUGUUGGCU---GUGUUACUGCCGCUGCCGCUGUUGCACUCAAGCUGCUGUCCAAAAGCGGUGGCAGGC
.(((((((((....)))))((((..((......))..)))---)..)))).(((((..(((((.(((.((..........)).))).)))))..)).))) ( -37.10)
>DroAna_CAF1 2028 100 - 1
GGUUAGCAGCGAUAGCUGGCGGUUGACUUUGUUGCCGGUGUUGUUGCCGGUGAUGCUGCUGCUGUUGCAAUCUAGCUGCUGGCCAAAUGCGGUGGCGGGC
((((((..((((((((.((((((.......((..(((((......)))))..))))))))))))))))...))))))(((.((((.......)))).))) ( -45.81)
>DroPer_CAF1 2242 94 - 1
GGUGCGGAGCGUCAGCUGGCGGCUUGCUUUGUUGCCGGUG------GUGUUGAGGCUGCUGCUGUUGCAGUCAAGCUGCUGCCCAAAGGCGGUGGCAGGC
...((..(((..((.((((((((.......))))))))))------..)))..((((((.......))))))..((..(((((....)))))..))..)) ( -42.30)
>consensus
GGUGAGCAGCGAUAGCUGGCGGUUGACUUUGUUGCCGGUG____UGUUGUUGACGCUGCUGCUGUUGCAAUCAAGCUGCUGCCCAAAGGCGGUGGCAGGC
........((((((((.((((((...............................))))))))))))))......((..((((......))))..)).... (-25.58 = -26.20 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:58 2006