Locus 2853

Sequence ID 2L_DroMel_CAF1
Location 8,173,578 – 8,173,678
Length 100
Max. P 0.838909
window4538

overview

Window 8

Location 8,173,578 – 8,173,678
Length 100
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 77.31
Mean single sequence MFE -28.78
Consensus MFE -20.74
Energy contribution -20.93
Covariance contribution 0.20
Combinations/Pair 1.18
Mean z-score -1.36
Structure conservation index 0.72
SVM decision value 0.74
SVM RNA-class probability 0.838909
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8173578 100 + 22407834
AUUA---AUA---CUAUAUAUUUUG------UAGGCCAUUUGCCAUCAUCGAAUGGCUAGUGCCUGAGGUGUUGGUUUUCGCCACCUCCCUGGGUUCGUAUCUCACGGUGAA
....---...---(((((.....))------)))((((((((.......))))))))....((((((((((.((((....))))((.....)).....))))))).)))... ( -27.20)
>DroPse_CAF1 438 106 + 1
AUCACUCAUCCCGCUCUCUCCCAUU------CAGGCCCCUGGCCAUCAUUGAGUGGCUGGCCCCGGAGGUCCUGGUGUUUGCCACCUCCCUUGGCUCCUACCUCACCGUGAA
.((((.....(((...((..(((((------((((((...)))).....)))))))..))...))).(((...((((...((((.......))))...))))..))))))). ( -34.20)
>DroSim_CAF1 448 100 + 1
AUUA---AUA---CUAUAUAUUUUG------UAGGCCAUUUGCCAUCAUCGAAUGGCUGGUGCCUGAGGUGUUGGUUUUCGCCACCUCCCUGGGUUCGUAUCUCACGGUGAA
....---...---(((((.....))------)))((((...(((((......)))))))))((((((((((.((((....))))((.....)).....))))))).)))... ( -27.40)
>DroEre_CAF1 438 104 + 1
AUUA---AUU---CUGUAU--CUCAUUUGCUUAGGCCAUUUGCUAUCAUUGAAUGGCUGGUGCCAGAGGUGCUGGUCUUCGCCACCUCCCUGGGAUCGUAUCUCACCGUGAA
....---...---......--.((((.......((((((((.........))))))))(((.((((.((.(.((((....)))).).)))))).)))..........)))). ( -28.10)
>DroYak_CAF1 464 98 + 1
AUUA---AUU---CUAUAU--UUCG------UAGGCCAUUUGCCAUCAUUGAAUGGCUGGUGCCCGAGGUGCUGGUAUUCGCCACCUCACUGGGAUCAUAUCUCACCGUGAA
....---...---...(((--((((------..(((.((..(((((......)))))..)))))))))))).((((....))))..((((((((((...))))))..)))). ( -26.20)
>DroPer_CAF1 442 106 + 1
AUCACUCAUCCCGCUCUCUCCCCUU------CAGGCCCCUGGCCAUCAUUGAGUGGCUGGCCCCGGAGGUCCUGGUGUUUGCCACCUCCCUUGGCUCCUACCUCACCGUAAA
.....................((((------(.((((...((((((......))))))))))..)))))....((((...((((.......))))...)))).......... ( -29.60)
>consensus
AUUA___AUA___CUAUAU__CUUG______UAGGCCAUUUGCCAUCAUUGAAUGGCUGGUGCCGGAGGUGCUGGUGUUCGCCACCUCCCUGGGAUCGUAUCUCACCGUGAA
.................................(((.((..(((((......)))))..))))).((((((.((((....))))((......))....))))))........ (-20.74 = -20.93 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:57 2006