Locus 2851

Sequence ID 2L_DroMel_CAF1
Location 8,170,380 – 8,170,486
Length 106
Max. P 0.736605
window4535

overview

Window 5

Location 8,170,380 – 8,170,486
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 96.51
Mean single sequence MFE -25.62
Consensus MFE -23.94
Energy contribution -23.74
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.23
Structure conservation index 0.93
SVM decision value 0.44
SVM RNA-class probability 0.736605
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8170380 106 - 22407834
CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAAACGCAGGCAGCUGCCGGCAAAAUGUC
.........(((((((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))).....((.(((....))).))...))))) ( -28.50)
>DroSec_CAF1 10163 106 - 1
CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGAACGAAACGCAGGCAGCUGCUGGCAAAAUGUC
.........(((((((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))).....((.(((....))).))...))))) ( -27.10)
>DroSim_CAF1 10751 106 - 1
CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGAACGAAACGCAGGCAGCUGCUGGCAAAAUGUC
.........(((((((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))).....((.(((....))).))...))))) ( -27.10)
>DroEre_CAF1 10631 106 - 1
CCCUUGUUUGAUAUGCUCAAUGUAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAAACGCAGGCAGCUGGUUGCAAAAUGUC
...((((((....((((..(((((.......))))).....)))).....))))))......(((((((((((....)))))((((.(....).)))).)))))). ( -20.60)
>DroYak_CAF1 10581 106 - 1
CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAGACACAGGCAGCUGAUGGCAAAAUGUC
.((((((((....(((((((.(((((((.((((..((((((........))))))..))))..))))))).)))))))))))).)))..((.....))........ ( -24.80)
>consensus
CCCUUGUUUGAUAUGUUCAAUGCAGAUGAAAUGCAUGUUUUGGCACUUGAAAACAAACAUUAACAUUUGUUUUGGACGAAACGCAGGCAGCUGCUGGCAAAAUGUC
....((((((...(((((((.(((((((.((((..((((((........))))))..))))..))))))).))))))).....))))))((.....))........ (-23.94 = -23.74 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:54 2006