| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 814,660 – 814,780 |
| Length | 120 |
| Max. P | 0.587786 |
| Location | 814,660 – 814,780 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -41.18 |
| Consensus MFE | -26.03 |
| Energy contribution | -25.95 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 814660 120 - 22407834 UGCUGGCGACUGCUCCGAGCAUGCAACUACAACGCCACUGCUAAUCACAAUGCCUGCCGGCCGGAGUACUUCAACCUGGCCGAGGUACUGGUCAGCCAGCUAAUGGCACCUUACGAAACU .(((((((((.......((((.((.........))...)))).....((.(((((..(((((((.((......)))))))))))))).))))).)))))).................... ( -39.10) >DroVir_CAF1 1296 120 - 1 UGUUGGCGCCUGUUGCGCGCCUGUAAUUACAACACACAGGCGAAUCACGUCAAUUGCCGUCCGGAGUAUUUUCAUCUGGCCGAGGUGCUCAUCAGUCAGCUGAUGGCGCCGUAUGAGACG .....((((.....))))((((((...........))))))......((((...(((((.(((((.........))))).)).(((((.((((((....))))))))))))))...)))) ( -46.10) >DroPse_CAF1 1199 120 - 1 UGCUGGCGGCUGCUCCGCGCCUGUAACUACAAUCCGCAGGCAAACCAAAACGCCUGUCGCCAGGAGUACUUCCACCUGGCCGAAGUGCUCGUCAGCCAGCUGAUGGCGCCCUACGAAACU .((.((((((......))((((((...........)))))).........)))).)).((((((.(......).))))))....((((.((((((....))))))))))........... ( -42.90) >DroGri_CAF1 1303 120 - 1 UGCUGGCGUCUGUUGCGCGCCUGUAAUUACAAUGGCCAUGCGAAUCAUAUCCAUUGUCGGCCAGAGUACUUCAAUCUGGCCGAAGUGCUCAUCAGUCAGUUAAUGGCACCGUUUGAAACC .((((((...((..((((...........((((((..(((.....)))..))))))(((((((((.........))))))))).)))).))...)))))).((((....))))....... ( -38.60) >DroMoj_CAF1 1254 120 - 1 UGCUGGCGAUUACUGCGCGCUUGUAACUACAAUCCGCUGGCGAAUCACAUCAAUUGUCGGCCGGAGUACUUCAACCUGGCCGAGGUGCUAAUCAGUCAGCUAAUGGCGCCAUAUGAGACC .((..(((......(....)((((....))))..)))..))........(((....((((((((.((......))))))))))(((((((...((....))..)))))))...))).... ( -37.50) >DroPer_CAF1 1205 120 - 1 UGCUGGCGGCUGCUCCGCGCCUGUAACUACAAUUCGCAGGCAAACCAAAACGCCUGUCGCCAGGAGUACUUCCACCUGGCCGAAGUGCUCGUCAGCCAGCUGAUGGCGCCCUACGAAACU .((.((((((......))((((((...........)))))).........)))).)).((((((.(......).))))))....((((.((((((....))))))))))........... ( -42.90) >consensus UGCUGGCGACUGCUCCGCGCCUGUAACUACAAUCCGCAGGCGAAUCACAACGACUGUCGGCCGGAGUACUUCAACCUGGCCGAAGUGCUCAUCAGCCAGCUAAUGGCGCCCUACGAAACU .((((((..........(((((((...........))))))).....................(((((((((.........)))))))))....)))))).................... (-26.03 = -25.95 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006