Locus 2846

Sequence ID 2L_DroMel_CAF1
Location 8,153,990 – 8,154,098
Length 108
Max. P 0.716259
window4521

overview

Window 1

Location 8,153,990 – 8,154,098
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.90
Mean single sequence MFE -27.00
Consensus MFE -20.70
Energy contribution -20.45
Covariance contribution -0.25
Combinations/Pair 1.23
Mean z-score -1.08
Structure conservation index 0.77
SVM decision value 0.39
SVM RNA-class probability 0.716259
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8153990 108 - 22407834
GCUUCUUUUAUAGAGCUUGAUUAGAGCUUCUUGUUGAUUAACUUACCCUGAUCCUCUUCUUUAGAAGAGUAAUGGCCGCAUCUUGGACCAGUUCCGUGUGUGGUGGGA
...((...((..((((((.....))))))..))..))........(((.....((((((....)))))).....(((((((..((((.....)))).)))))))))). ( -30.70)
>DroVir_CAF1 22087 89 - 1
CCCUUUAU-------------------GCUCUAGUUAUUUACUCACGCGUAUUCGCUUCUUGAGUAGUGUUAUGGCCGCAUCCUGGACCAUUUCCGUGUGCGGCGGUA
........-------------------...........(((((((.(((....)))....)))))))...(((.(((((((..((((.....)))).))))))).))) ( -26.10)
>DroSec_CAF1 20119 89 - 1
GCUUCUUC-------------------GCACUGUUGAUCAACUCACCCGGAUCCUCUUCUUCAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA
......((-------------------((.(((((((...........(((......)))))))))).))))(.(((((((..((((.....)))).))))))).).. ( -27.20)
>DroSim_CAF1 21882 89 - 1
GCUUCUUC-------------------GCACUGUUGAUCAACUCACCCUAAUCCUCUUCUUUAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUAUGUGGUGGGA
((......-------------------))................(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). ( -23.40)
>DroEre_CAF1 19948 89 - 1
GGUUCUUU-------------------GAUCUGUUGAUCAACUCACCCUGAUCCUCUUCUUCAGCAGAGUGAUGGCUGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA
......((-------------------((((....))))))....(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). ( -27.90)
>DroYak_CAF1 19944 89 - 1
UGCUCUCA-------------------ACACUGUUGAUCAACUCACCCUGAUCCUCUUCUUCAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA
.....(((-------------------((...)))))........(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). ( -26.70)
>consensus
GCUUCUUU___________________GCACUGUUGAUCAACUCACCCUGAUCCUCUUCUUCAGCAGAGUGAUGGCCGCAUCUUGGACCAGUUCCGUGUGCGGUGGGA
.............................................(((..(((((((.(....).)))).))).(((((((..((((.....)))).)))))))))). (-20.70 = -20.45 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:41 2006