Locus 2844

Sequence ID 2L_DroMel_CAF1
Location 8,148,691 – 8,148,790
Length 99
Max. P 0.604720
window4519

overview

Window 9

Location 8,148,691 – 8,148,790
Length 99
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.96
Mean single sequence MFE -25.95
Consensus MFE -11.07
Energy contribution -11.82
Covariance contribution 0.74
Combinations/Pair 1.25
Mean z-score -2.37
Structure conservation index 0.43
SVM decision value 0.14
SVM RNA-class probability 0.604720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8148691 99 + 22407834
UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG--UGGCCAUACAGC-----CAGCUAUAGCAGCGGGUAUACGUACACCC-AUACCCCUAUCUAUAUACCUGCUGC
...(((((.........((((........))))--((((......))-----))))))).((((((((((((.........-.............)))))))))))) ( -27.65)
>DroSec_CAF1 14820 99 + 1
UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG--UGGCCAUACAGC-----CAGCUAUAGCAUCGGGUAUACCUAUACCC-AUACCCCUAUCUAUAUACCUGCUGC
...(((((.(((....................)--))))))).((((-----..((....))...((((((....))))))-....................)))). ( -23.05)
>DroSim_CAF1 16384 99 + 1
UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG--UGGCCAUACAGC-----CAGCUAUAGCAUCGGGUAUACCUAUACCC-AUACCCCUAUCUAUAUACCUGCUGC
...(((((.(((....................)--))))))).((((-----..((....))...((((((....))))))-....................)))). ( -23.05)
>DroEre_CAF1 14673 104 + 1
UCAGUGGCACGCUCUUCUAGAUUCCAACUUCUG--UGGCCAUAUAGCAAUAGCAGCUACAGUGGCGGGUUUACCUAUACCC-AGACCGCUAUCUAUAUACCUGCUGC
.(((((((.(((......(((........))))--)))))((((((..(((((.(((.....)))((((........))))-.....)))))))))))....)))). ( -27.60)
>DroYak_CAF1 14463 106 + 1
UCAGUGGCACGCUCUUCUAGAUUCCAACCGCUGGCUGGCCAUAUAGCAAUAGCAGCUAUAGCAGCGGGUAUACCCAUACCC-AUACCUCUAUCUACAUACCUGCUGC
(((((((.....((.....))......))))))).......((((((.......))))))(((((((((((..........-..............))))))))))) ( -28.46)
>DroAna_CAF1 14488 80 + 1
UCAGUGGCACGCUCUUCUAGAUUCCAACCUGU----AGC--------------UGCUACAGCUUCGACUUCAGCUUCAGCUGAUG----UGGCUGUGUAGCU-----
.((((((....((.....))...)))..))).----(((--------------(((.((((((...((.(((((....))))).)----)))))))))))))----- ( -25.90)
>consensus
UCAGUGGCACGCUCUUCUAGAUUCCAACCUCUG__UGGCCAUACAGC_____CAGCUAUAGCAGCGGGUAUACCUAUACCC_AUACCCCUAUCUAUAUACCUGCUGC
...(((((..(((....((((........))))...)))......(......).))))).(((.((((((((.......................)))))))).))) (-11.07 = -11.82 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:39 2006